Expression: microarray expression data | digital expression data | microarray data warehouse | array probe annotation | similar/inverse expression profile search | array data analysis | download analyzed array results

Metabolite: compounds | pennellii lines | hirsutum lines | correlation of metabolite and gene expression profiles

small RNAs: small RNA | miRNA | prediction of miRNA:mRNA interaction

ordering: price information | order cDNA, BAC or fosmid clones | order TOM2 oligo arrays | order BAC library filters

Update on tomato small RNA database - March 2009
The tomato small RNAs were re-analyzed 1) by comparing them to the most recent tomato genome and BAC/fosmid end sequences; 2) using a refined the miRNA identification protocol; 3) by including newest SGN unigene build and ITAG annotated cDNAs for target prediction. Details...

Release of Plant MetGenMAP - Jan. 2009
We have developed a web-based package, Plant MetGenMAP, that allows to identify changed pathways and biological processes from gene/protein expression and metabolite profile datasets and to view the profile data in the context of biochemical pathways. Part of the tool was also integrated into the Tomato Functional Genomics Database.

Note to TOM2 cDNA array users - Oct 2008
Due to the multiple printing formats of TOM2 arrays, the system has stopped supporting the probe ID system for TOM2 arrays and started to use the original Plate IDs. If you are using CGEP printed probe IDs, you can convert them to plate IDs from here. Please contact us regarding the ID conversion if your TOM2 arrays were printed elsewhere