Tomato array GO term analysis

The purpose of Tomato Gene Ontology (GO) term analysis tool is to calculate enrichment in functional categories (or identify over-represented GO terms) from a list of interesting genes on a tomato array (mostly a list of differentially expressed genes identified from microarray experiments). The GO term assignment of genes on TOM1 array was provided by SGN

This tool was developed based on perl module GO::TermFinder. For more information, please check GO::TermFinder help page at Stanford Microarray Database. For background information on GO term analysis tools, please check the following review article:

Khatri, P. and Draghici, C (2005) Ontological analysis of gene expression data: current tools, limitations, and open problems. Bioinformatics 21:3587-3595