Expression of 1-1-1.1.1.12
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07059 | 0.863 |
27DAP/17DAP | 0.56603 | 0.027 |
39DAP/27DAP | 0.71527 | 0.353 |
41DAP/39DAP | 0.86752 | 0.475 |
42DAP/41DAP | 0.96104 | 1 |
43DAP/42DAP | 1.18463 | 1 |
47DAP/43DAP | 0.82573 | 0.439 |
52DAP/47DAP | 0.96211 | 0.823 |
57DAP/52DAP | 0.97853 | 0.971 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02675 | 0.76 |
17DAP/reference | 1.08406 | 0.053 |
27DAP/reference | 0.87599 | 0.073 |
39DAP/reference | 0.97651 | 0.68 |
41DAP/reference | 0.87059 | 0.201 |
42DAP/reference | 0.85245 | 0.005 |
43DAP/reference | 1.08574 | 0.233 |
47DAP/reference | 0.82062 | 0.013 |
52DAP/reference | 0.77913 | 0.147 |
57DAP/reference | 0.82365 | 0.165 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.85071 | 0.299 |
27DAP/17DAP | 1.07443 | 0.945 |
39DAP/27DAP | 0.50507 | 0.032 |
41DAP/39DAP | 0.49942 | 0.013 |
42DAP/41DAP | 0.99716 | 0.845 |
43DAP/42DAP | 1.02717 | 0.699 |
47DAP/43DAP | 0.81277 | 0.031 |
52DAP/47DAP | 1.01454 | 0.97 |
57DAP/52DAP | 0.8592 | 0.454 |
57DAP/7DAP | 0.64987 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.73944 | 0.027 |
17DAP/reference | 1.34526 | 0.008 |
27DAP/reference | 1.12995 | 0.041 |
39DAP/reference | 1.18311 | 0.411 |
41DAP/reference | 1.10559 | 0.491 |
42DAP/reference | 1.18728 | 0.308 |
43DAP/reference | 0.89342 | 0.04 |
47DAP/reference | 0.72879 | 0.101 |
52DAP/reference | 1.18135 | 0.034 |
57DAP/reference | 1.13697 | 0.057 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89188 | 0.182 |
17DAP/reference | 0.90829 | 0.159 |
27DAP/reference | 0.91113 | 0.327 |
39DAP/reference | 0.77096 | 0.013 |
41DAP/reference | 0.85838 | 0.083 |
42DAP/reference | 0.78147 | 0.024 |
43DAP/reference | 0.75326 | 0.021 |
47DAP/reference | 0.84579 | 0.018 |
52DAP/reference | 0.74888 | 0.004 |
57DAP/reference | 0.68655 | 0.003 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.69006 | 0.025 |
17DAP/reference | 1.51004 | 0.146 |
27DAP/reference | 0.93701 | 0.27 |
39DAP/reference | 1.12224 | 0.264 |
41DAP/reference | 1.28411 | 0.009 |
42DAP/reference | 0.86336 | 0.172 |
43DAP/reference | 0.80774 | 0.095 |
47DAP/reference | 0.79859 | 0.027 |
52DAP/reference | 0.78136 | 0.098 |
57DAP/reference | 0.92636 | 0.333 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.0418 | 0.966 |
26DAP/20DAP | 0.84376 | 1 |
34DAP/26DAP | 0.99452 | 0.97 |
51DAP/34DAP | 0.65089 | 0.061 |
52DAP/51DAP | 0.96881 | 1 |
53DAP/52DAP | 0.93212 | 0.767 |
55DAP/53DAP | 1.06568 | 0.994 |
57DAP/55DAP | 1.03049 | 0.899 |
62DAP/57DAP | 1.2458 | 0.622 |
68DAP/62DAP | 1.07981 | 0.907 |
68DAP/14DAP | 1.11473 | 0.694 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.47898 | 0.028 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.70191 | 0.058 |
Mature Green Tomato/Ripe Tomato | 3.68756 | 0.034 |
Immature Eggplant/Mature Eggplant | 0.48293 | 0.061 |
Ripe Pepper/Ripe Tomato | 1.13331 | 1 |
Mature Eggplant/Ripe Tomato | 2.7482 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.9317 | 0.944 |
1-1-2/M82 | 0.97594 | 1 |
12-2/M82 | 0.97127 | 0.955 |
12-4/M82 | 1.01122 | 1 |
1-3/M82 | 0.65606 | 0.378 |
2-1-1/M82 | 1.21904 | 0.689 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.33897 | 0.505 |
3-2/M82 | 0.98663 | 1 |
4-1-1/M82 | 1.1046 | 1 |
4-1/M82 | 0.85093 | 1 |
4-3-2/M82 | 1.03437 | 1 |
4-3/M82 | 0.87676 | 0.466 |
5-3/M82 | 1.0072 | 1 |
6-2/M82 | 1.02254 | 1 |
6-3/M82 | 1.09012 | 1 |
7-1/M82 | 1.15037 | 0.992 |
7-2/M82 | 1.13355 | 0.385 |
9-3-2/M82 | 0.79066 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.19252 | 0.277 |
IL2-6/WTpooled | 0.91187 | 1 |
IL7-5/WTpooled | 0.85579 | 1 |
IL7-3/WTpooled | 0.9802 | 1 |
IL12-4/WTpooled | 0.75538 | 0.497 |
IL1-4/WTpooled | 0.93391 | 0.562 |
WT/WTpooled | 1.01847 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.93359 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99133 | 1 |
DC3000/delta hrp 6h | 0.90241 | 0.95 |
DC3000/delta hrp 12h | 0.97058 | 1 |
DC3000/delta hrp 24h | 0.89859 | 0.163 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.4989 | 0.024 |
DC3000 delta B/DC3000 delta AB | 0.43776 | 0.023 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.95129 | 1 |
Exp 36h | 0.85617 | 0.589 |
Exp 60h | 0.81631 | 0.454 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99647 | 1 |
Var 0h | 1.05038 | 0.98 |
Var 12h I row2-row1 | 0.74052 | 0.338 |
Var 12h NI row2-row1 | 0.9665 | 0.906 |
Var 36h I row2-row1 | 1.02494 | 1 |
Var 36h NI row2-row1 | 1.19093 | 1 |
Var 60h I row2-row1 | 1.12959 | 0.562 |
Var 60h NI row2-row1 | 1.06031 | 1 |
Time course 0hI-0hNI | 2.51309 | 0.799 |
Time course 12hI-12hNI | 0.93898 | 0.612 |
Time course 36hI-36hNI | 0.78405 | 0.038 |
Time course 60hI-60hNI | 0.098 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.13386 | 0.748 |
transgenic ySAMdc/azygous control (breaker) | 4.1942 | 0.162 |
transgenic ySAMdc/azygous control (red) | 0.934 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.8472 | 0.131 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.65011 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.54452 | 0.083 |
Manapal/WT (break) | 6.86887 | 0.14 |
Manapal/WT (red) | 5.03956 | 0.142 |
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