Expression of 1-1-1.1.1.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.54099 | 0.017 |
27DAP/17DAP | 0.97146 | 0.973 |
39DAP/27DAP | 1.13474 | 0.83 |
41DAP/39DAP | 1.10018 | 0.249 |
42DAP/41DAP | 0.86659 | 0.774 |
43DAP/42DAP | 0.84927 | 0.77 |
47DAP/43DAP | 2.41197 | 0.239 |
52DAP/47DAP | 1.17284 | 0.869 |
57DAP/52DAP | 1.40223 | 0.568 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13326 | 0.265 |
17DAP/reference | 0.89711 | 0.18 |
27DAP/reference | 0.91922 | 0.385 |
39DAP/reference | 1.03302 | 0.581 |
41DAP/reference | 0.94296 | 0.114 |
42DAP/reference | 0.91223 | 0.056 |
43DAP/reference | 0.91205 | 0.273 |
47DAP/reference | 1.21835 | 0.078 |
52DAP/reference | 1.56184 | 0.019 |
57DAP/reference | 1.59991 | 0.011 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.6728 | 0.068 |
27DAP/17DAP | 1.09299 | 0.74 |
39DAP/27DAP | 0.96962 | 0.804 |
41DAP/39DAP | 1.22271 | 0.417 |
42DAP/41DAP | 1.02137 | 1 |
43DAP/42DAP | 0.80617 | 0.031 |
47DAP/43DAP | 1.02952 | 0.948 |
52DAP/47DAP | 1.22853 | 0.474 |
57DAP/52DAP | 1.15562 | 0.699 |
57DAP/7DAP | 2.81758 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12481 | 0.16 |
17DAP/reference | 1.10656 | 0.477 |
27DAP/reference | 1.12191 | 0.088 |
39DAP/reference | 1.19197 | 0.09 |
41DAP/reference | 0.99009 | 0.646 |
42DAP/reference | 1.06987 | 0.405 |
43DAP/reference | 1.08954 | 0.307 |
47DAP/reference | 1.01486 | 1 |
52DAP/reference | 1.25729 | 0.113 |
57DAP/reference | 1.00622 | 0.719 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04463 | 0.812 |
17DAP/reference | 0.93671 | 0.422 |
27DAP/reference | 0.90954 | 0.144 |
39DAP/reference | 1.29327 | 0.477 |
41DAP/reference | 0.97968 | 0.459 |
42DAP/reference | 0.95448 | 0.321 |
43DAP/reference | 1.0246 | 0.939 |
47DAP/reference | 1.01873 | 0.675 |
52DAP/reference | 1.09428 | 0.596 |
57DAP/reference | 0.80181 | 0.226 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.35968 | 0.027 |
17DAP/reference | 0.96884 | 0.601 |
27DAP/reference | 1.14835 | 0.312 |
39DAP/reference | 1.1192 | 0.365 |
41DAP/reference | 1.06841 | 0.818 |
42DAP/reference | 1.01676 | 0.893 |
43DAP/reference | 1.03369 | 0.71 |
47DAP/reference | 0.99311 | 0.61 |
52DAP/reference | 1.11382 | 0.674 |
57DAP/reference | 2.00103 | 0.009 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.26023 | 0.966 |
26DAP/20DAP | 1.59752 | |
34DAP/26DAP | 4.81829 | |
51DAP/34DAP | 1.14637 | 0.883 |
52DAP/51DAP | 0.62782 | |
53DAP/52DAP | 0.83248 | 0.527 |
55DAP/53DAP | 1.19472 | 0.798 |
57DAP/55DAP | 0.99787 | 0.961 |
62DAP/57DAP | 0.65911 | |
68DAP/62DAP | 0.91675 | |
68DAP/14DAP | 1.63121 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.80021 | 0.039 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 4.14671 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.7634 | 0.2 |
Immature Eggplant/Mature Eggplant | 1.34083 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.06687 | 0.293 |
Mature Eggplant/Ripe Tomato | 0.37075 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.89397 | 0.883 |
1-1-2/M82 | 0.98793 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.74452 | 0.358 |
1-3/M82 | 1.24321 | 1 |
2-1-1/M82 | 0.93668 | 1 |
2-1/M82 | 0.96886 | |
2-6/M82 | 1.11376 | 1 |
3-2/M82 | 0.76305 | 0.752 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.92374 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.71337 | 0.611 |
5-3/M82 | 0.93437 | 0.642 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.68331 | 1 |
7-1/M82 | 1.41515 | |
7-2/M82 | 0.83137 | 0.881 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.99149 | 1 |
IL2-6/WTpooled | 0.90664 | 1 |
IL7-5/WTpooled | 1.44814 | |
IL7-3/WTpooled | 0.91253 | 0.418 |
IL12-4/WTpooled | 0.81934 | 0.581 |
IL1-4/WTpooled | 1.50915 | 0.399 |
WT/WTpooled | 0.94947 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.20154 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98034 | 1 |
DC3000/delta hrp 6h | 1.42168 | 1 |
DC3000/delta hrp 12h | 1.02972 | 1 |
DC3000/delta hrp 24h | 0.90219 | 0.313 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.71898 | 1 |
Exp 36h | 0.96371 | 0.879 |
Exp 60h | 0.85827 | 0.586 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.95337 | 1 |
Var 0h | 1.30333 | 0.594 |
Var 12h I row2-row1 | 0.98476 | 0.948 |
Var 12h NI row2-row1 | 1.33175 | 1 |
Var 36h I row2-row1 | 1.33951 | 0.305 |
Var 36h NI row2-row1 | 1.21328 | 0.743 |
Var 60h I row2-row1 | 0.84869 | 0.374 |
Var 60h NI row2-row1 | 0.93574 | 1 |
Time course 0hI-0hNI | 2.24728 | 1 |
Time course 12hI-12hNI | 1.18764 | 0.059 |
Time course 36hI-36hNI | 1.08484 | 0.569 |
Time course 60hI-60hNI | 0.92543 | 0.319 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.71963 | 0.227 |
transgenic ySAMdc/azygous control (breaker) | 0.68231 | 0.137 |
transgenic ySAMdc/azygous control (red) | 0.87091 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96011 | 0.431 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.01061 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.22241 | 0.084 |
Manapal/WT (break) | 1.17509 | 1 |
Manapal/WT (red) | 0.85048 | 0.242 |
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