Expression of 1-1-1.1.1.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.540990.017
27DAP/17DAP0.971460.973
39DAP/27DAP1.134740.83
41DAP/39DAP1.100180.249
42DAP/41DAP0.866590.774
43DAP/42DAP0.849270.77
47DAP/43DAP2.411970.239
52DAP/47DAP1.172840.869
57DAP/52DAP1.402230.568

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.133260.265
17DAP/reference0.897110.18
27DAP/reference0.919220.385
39DAP/reference1.033020.581
41DAP/reference0.942960.114
42DAP/reference0.912230.056
43DAP/reference0.912050.273
47DAP/reference1.218350.078
52DAP/reference1.561840.019
57DAP/reference1.599910.011

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.67280.068
27DAP/17DAP1.092990.74
39DAP/27DAP0.969620.804
41DAP/39DAP1.222710.417
42DAP/41DAP1.021371
43DAP/42DAP0.806170.031
47DAP/43DAP1.029520.948
52DAP/47DAP1.228530.474
57DAP/52DAP1.155620.699
57DAP/7DAP2.81758

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.124810.16
17DAP/reference1.106560.477
27DAP/reference1.121910.088
39DAP/reference1.191970.09
41DAP/reference0.990090.646
42DAP/reference1.069870.405
43DAP/reference1.089540.307
47DAP/reference1.014861
52DAP/reference1.257290.113
57DAP/reference1.006220.719

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.044630.812
17DAP/reference0.936710.422
27DAP/reference0.909540.144
39DAP/reference1.293270.477
41DAP/reference0.979680.459
42DAP/reference0.954480.321
43DAP/reference1.02460.939
47DAP/reference1.018730.675
52DAP/reference1.094280.596
57DAP/reference0.801810.226

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.359680.027
17DAP/reference0.968840.601
27DAP/reference1.148350.312
39DAP/reference1.11920.365
41DAP/reference1.068410.818
42DAP/reference1.016760.893
43DAP/reference1.033690.71
47DAP/reference0.993110.61
52DAP/reference1.113820.674
57DAP/reference2.001030.009

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.260230.966
26DAP/20DAP1.59752
34DAP/26DAP4.81829
51DAP/34DAP1.146370.883
52DAP/51DAP0.62782
53DAP/52DAP0.832480.527
55DAP/53DAP1.194720.798
57DAP/55DAP0.997870.961
62DAP/57DAP0.65911
68DAP/62DAP0.91675
68DAP/14DAP1.63121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.800210.039

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper4.146710.058
Mature Green Tomato/Ripe Tomato0.76340.2
Immature Eggplant/Mature Eggplant1.340830.05
Ripe Pepper/Ripe Tomato0.066870.293
Mature Eggplant/Ripe Tomato0.370750.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.893970.883
1-1-2/M820.987931
12-2/M82N/AN/A
12-4/M820.744520.358
1-3/M821.243211
2-1-1/M820.936681
2-1/M820.96886
2-6/M821.113761
3-2/M820.763050.752
4-1-1/M82N/AN/A
4-1/M820.92374
4-3-2/M82N/AN/A
4-3/M820.713370.611
5-3/M820.934370.642
6-2/M82N/AN/A
6-3/M821.683311
7-1/M821.41515
7-2/M820.831370.881
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.991491
IL2-6/WTpooled0.906641
IL7-5/WTpooled1.44814
IL7-3/WTpooled0.912530.418
IL12-4/WTpooled0.819340.581
IL1-4/WTpooled1.509150.399
WT/WTpooled0.949471

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.201540.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.980341
DC3000/delta hrp 6h1.421681
DC3000/delta hrp 12h1.029721
DC3000/delta hrp 24h0.902190.313

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.718981
Exp 36h0.963710.879
Exp 60h0.858270.586

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.953371
Var 0h1.303330.594
Var 12h I row2-row10.984760.948
Var 12h NI row2-row11.331751
Var 36h I row2-row11.339510.305
Var 36h NI row2-row11.213280.743
Var 60h I row2-row10.848690.374
Var 60h NI row2-row10.935741
Time course 0hI-0hNI2.247281
Time course 12hI-12hNI1.187640.059
Time course 36hI-36hNI1.084840.569
Time course 60hI-60hNI0.925430.319

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.719630.227
transgenic ySAMdc/azygous control (breaker)0.682310.137
transgenic ySAMdc/azygous control (red)0.870911

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.960110.431

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.010611

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.222410.084
Manapal/WT (break)1.175091
Manapal/WT (red)0.850480.242