Expression of 1-1-1.1.1.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.21928 | 0.786 |
27DAP/17DAP | 0.80638 | 0.49 |
39DAP/27DAP | 1.07318 | 0.961 |
41DAP/39DAP | 1.17347 | 0.722 |
42DAP/41DAP | 1.39738 | 0.488 |
43DAP/42DAP | 1.15802 | 0.861 |
47DAP/43DAP | 0.73729 | 0.274 |
52DAP/47DAP | 1.38519 | 0.516 |
57DAP/52DAP | 0.69655 | 0.462 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.72487 | 0.008 |
17DAP/reference | 1.30778 | 0.059 |
27DAP/reference | 1.19077 | 0.357 |
39DAP/reference | 1.09869 | 0.203 |
41DAP/reference | 1.11123 | 0.808 |
42DAP/reference | 1.35116 | 0.022 |
43DAP/reference | 1.05461 | 0.942 |
47DAP/reference | 0.88174 | 0.137 |
52DAP/reference | 0.91373 | 0.237 |
57DAP/reference | 0.91903 | 0.308 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93773 | 0.311 |
27DAP/17DAP | 1.1811 | 0.523 |
39DAP/27DAP | 0.82008 | 0.102 |
41DAP/39DAP | 0.90271 | 0.333 |
42DAP/41DAP | 1.00679 | 0.887 |
43DAP/42DAP | 1.28742 | 0.072 |
47DAP/43DAP | 1.00399 | 0.973 |
52DAP/47DAP | 0.9009 | 0.35 |
57DAP/52DAP | 1.16634 | 0.457 |
57DAP/7DAP | 2.19789 | 0.249 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.24355 | 0.088 |
17DAP/reference | 1.05406 | 1 |
27DAP/reference | 0.90588 | 0.146 |
39DAP/reference | 1.07617 | 1 |
41DAP/reference | 0.91899 | 0.357 |
42DAP/reference | 1.31379 | 0.686 |
43DAP/reference | 1.25295 | 0.212 |
47DAP/reference | 1.22703 | 0.279 |
52DAP/reference | 1.07664 | 0.563 |
57DAP/reference | 1.05205 | 0.799 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.34666 | 0.516 |
17DAP/reference | 2.4551 | 0.022 |
27DAP/reference | 1.22117 | 0.156 |
39DAP/reference | 1.09029 | 0.346 |
41DAP/reference | 1.21598 | 0.126 |
42DAP/reference | 1.26195 | 0.596 |
43DAP/reference | 1.21399 | 0.373 |
47DAP/reference | 1.36433 | 0.074 |
52DAP/reference | 1.4103 | 0.016 |
57DAP/reference | 1.40005 | 0.398 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16074 | 0.196 |
17DAP/reference | 1.40185 | 0.326 |
27DAP/reference | 1.27878 | 0.03 |
39DAP/reference | 1.1535 | 0.546 |
41DAP/reference | 0.87461 | 0.293 |
42DAP/reference | 1.1204 | 0.848 |
43DAP/reference | 1.01366 | 0.858 |
47DAP/reference | 1.66413 | 0.007 |
52DAP/reference | 2.2202 | 0.483 |
57DAP/reference | 3.02978 | 0.027 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 2.21114 | |
26DAP/20DAP | 0.83156 | 0.244 |
34DAP/26DAP | 1.07844 | 1 |
51DAP/34DAP | 0.84944 | 0.317 |
52DAP/51DAP | 1.27148 | 0.454 |
53DAP/52DAP | 1.0815 | 0.688 |
55DAP/53DAP | 1.59578 | 0.576 |
57DAP/55DAP | 0.90299 | 0.804 |
62DAP/57DAP | 1.20715 | 0.006 |
68DAP/62DAP | 1.00274 | 0.939 |
68DAP/14DAP | 1.71505 | 0.594 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.0739 | 1 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.03942 | 0.666 |
Mature Green Tomato/Ripe Tomato | 1.53647 | 0.185 |
Immature Eggplant/Mature Eggplant | 0.99198 | 1 |
Ripe Pepper/Ripe Tomato | 0.80331 | 1 |
Mature Eggplant/Ripe Tomato | 1.02181 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.92801 | 0.961 |
1-1-2/M82 | 1.61296 | 1 |
12-2/M82 | 0.90159 | |
12-4/M82 | 0.92809 | 1 |
1-3/M82 | 0.88543 | |
2-1-1/M82 | 1.66219 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.94078 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.28788 | |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.78703 | 0.72 |
5-3/M82 | 0.96517 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.07836 | 1 |
7-1/M82 | 1.35261 | |
7-2/M82 | 0.8286 | 0.881 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.01856 | 0.493 |
IL2-6/WTpooled | 1.21701 | 0.419 |
IL7-5/WTpooled | 1.26295 | 0.792 |
IL7-3/WTpooled | 1.12469 | 1 |
IL12-4/WTpooled | 0.84128 | 0.71 |
IL1-4/WTpooled | 1.0525 | 1 |
WT/WTpooled | 0.87138 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.93905 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.93213 | 1 |
DC3000/delta hrp 6h | 0.93321 | 0.95 |
DC3000/delta hrp 12h | 1.02183 | 1 |
DC3000/delta hrp 24h | 1.54814 | 0.283 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.86245 | 0.436 |
DC3000 delta B/DC3000 delta AB | 0.61914 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.00011 | 1 |
Exp 36h | 0.62781 | 0.406 |
Exp 60h | 0.87509 | 0.664 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00185 | 1 |
Var 0h | 0.89965 | 1 |
Var 12h I row2-row1 | 1.14971 | 0.795 |
Var 12h NI row2-row1 | 0.98582 | 1 |
Var 36h I row2-row1 | 1.00402 | 1 |
Var 36h NI row2-row1 | 1.10002 | 1 |
Var 60h I row2-row1 | 0.97456 | 0.952 |
Var 60h NI row2-row1 | 1.01228 | 1 |
Time course 0hI-0hNI | 1.56189 | 0.833 |
Time course 12hI-12hNI | 0.97908 | 0.886 |
Time course 36hI-36hNI | 0.87007 | 0.091 |
Time course 60hI-60hNI | 0.31799 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.14726 | 0.36 |
transgenic ySAMdc/azygous control (breaker) | 0.95539 | 1 |
transgenic ySAMdc/azygous control (red) | 1.08271 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.87349 | 0.126 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.33119 | 0.229 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.23758 | 0.307 |
Manapal/WT (break) | 2.27842 | 0.123 |
Manapal/WT (red) | 1.18767 | 1 |
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