Expression of 1-1-1.1.10.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.73502 | 0.089 |
27DAP/17DAP | 0.92672 | 0.857 |
39DAP/27DAP | 0.95148 | 0.67 |
41DAP/39DAP | 0.93302 | 0.724 |
42DAP/41DAP | 0.8303 | 1 |
43DAP/42DAP | 0.78251 | 0.456 |
47DAP/43DAP | 0.96623 | 0.864 |
52DAP/47DAP | 1.1891 | 0.902 |
57DAP/52DAP | 1.12391 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03813 | 0.735 |
17DAP/reference | 0.96209 | 0.567 |
27DAP/reference | 0.98454 | 0.725 |
39DAP/reference | 0.94139 | 0.565 |
41DAP/reference | 0.79292 | 0.039 |
42DAP/reference | 0.9549 | 0.233 |
43DAP/reference | 1.28463 | 0.061 |
47DAP/reference | 0.94751 | 0.322 |
52DAP/reference | 1.0675 | 0.951 |
57DAP/reference | 1.20288 | 0.186 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.84529 | 0.27 |
27DAP/17DAP | 1.0276 | 0.98 |
39DAP/27DAP | 0.83054 | 0.211 |
41DAP/39DAP | 0.90311 | 0.713 |
42DAP/41DAP | 1.0219 | 0.934 |
43DAP/42DAP | 0.943 | 0.558 |
47DAP/43DAP | 0.9626 | 0.846 |
52DAP/47DAP | 1.02522 | 0.939 |
57DAP/52DAP | 1.16018 | 0.427 |
57DAP/7DAP | 0.80585 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03241 | 0.876 |
17DAP/reference | 0.99689 | 0.693 |
27DAP/reference | 0.94089 | 0.303 |
39DAP/reference | 1.05945 | 0.74 |
41DAP/reference | 0.86804 | 0.111 |
42DAP/reference | 0.91873 | 0.2 |
43DAP/reference | 0.88604 | 0.079 |
47DAP/reference | 1.03824 | 0.868 |
52DAP/reference | 0.77507 | 0.013 |
57DAP/reference | 0.91891 | 0.132 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.1071 | 0.589 |
17DAP/reference | 0.85964 | 0.195 |
27DAP/reference | 0.85399 | 0.304 |
39DAP/reference | 1.0526 | 0.824 |
41DAP/reference | 0.85589 | 0.091 |
42DAP/reference | 0.86359 | 0.081 |
43DAP/reference | 1.04864 | 0.748 |
47DAP/reference | 0.71186 | 0.01 |
52DAP/reference | 0.86463 | 0.072 |
57DAP/reference | 0.61267 | 0.014 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15471 | 0.103 |
17DAP/reference | 0.9613 | 0.571 |
27DAP/reference | 0.80412 | 0.046 |
39DAP/reference | 0.83677 | 0.028 |
41DAP/reference | 0.88446 | 0.264 |
42DAP/reference | 0.92536 | 0.287 |
43DAP/reference | 0.8629 | 0.037 |
47DAP/reference | 0.79389 | 0.066 |
52DAP/reference | 0.77866 | 0.074 |
57DAP/reference | 0.90278 | 0.154 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.91723 | 1 |
26DAP/20DAP | 1.29275 | 0.421 |
34DAP/26DAP | 1.09444 | 1 |
51DAP/34DAP | 1.14709 | 0.581 |
52DAP/51DAP | 0.88667 | 1 |
53DAP/52DAP | 0.68309 | 0.062 |
55DAP/53DAP | 0.49371 | 0.022 |
57DAP/55DAP | 0.72527 | 0.074 |
62DAP/57DAP | 1.24998 | 0.081 |
68DAP/62DAP | 1.61715 | 0.808 |
68DAP/14DAP | 0.57213 | 0.09 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.55317 | 0.02 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.1354 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.13815 | 1 |
Immature Eggplant/Mature Eggplant | 0.84021 | 0.092 |
Ripe Pepper/Ripe Tomato | 0.91476 | 0.224 |
Mature Eggplant/Ripe Tomato | 2.59753 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.3584 | 0.551 |
1-1-2/M82 | 1.03372 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.18783 | 1 |
1-3/M82 | 0.64576 | 0.378 |
2-1-1/M82 | 0.6888 | 0.465 |
2-1/M82 | 0.84738 | |
2-6/M82 | 1.14322 | 1 |
3-2/M82 | 1.00216 | |
4-1-1/M82 | 1.19907 | |
4-1/M82 | 0.89511 | |
4-3-2/M82 | 0.65733 | |
4-3/M82 | 0.5877 | 0.509 |
5-3/M82 | 0.84556 | 0.642 |
6-2/M82 | 1.33457 | |
6-3/M82 | 1.08061 | 1 |
7-1/M82 | 0.87665 | |
7-2/M82 | 1.03424 | 1 |
9-3-2/M82 | 1.14123 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.29126 | |
IL2-6/WTpooled | 1.1055 | 1 |
IL7-5/WTpooled | 1.42748 | |
IL7-3/WTpooled | 1.17937 | 1 |
IL12-4/WTpooled | 0.93203 | 0.581 |
IL1-4/WTpooled | 1.0849 | 1 |
WT/WTpooled | 0.93558 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.95702 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.28563 | 0.656 |
DC3000/delta hrp 6h | 0.91682 | 0.95 |
DC3000/delta hrp 12h | 0.96776 | 1 |
DC3000/delta hrp 24h | 0.845 | 0.145 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.88911 | 0.436 |
DC3000 delta B/DC3000 delta AB | 0.90784 | 0.497 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.84515 | 1 |
Exp 36h | 1.01865 | 1 |
Exp 60h | 0.85114 | 0.386 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03739 | 1 |
Var 0h | 1.25388 | 0.936 |
Var 12h I row2-row1 | 1.14302 | 0.544 |
Var 12h NI row2-row1 | 1.3674 | 0.235 |
Var 36h I row2-row1 | 0.96727 | 0.313 |
Var 36h NI row2-row1 | 1.06155 | 1 |
Var 60h I row2-row1 | 0.70885 | 0.287 |
Var 60h NI row2-row1 | 1.1709 | 0.904 |
Time course 0hI-0hNI | 1.01724 | 1 |
Time course 12hI-12hNI | 0.88588 | 0.144 |
Time course 36hI-36hNI | 0.87882 | 0.052 |
Time course 60hI-60hNI | 1.05519 | 1 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.88231 | 0.32 |
transgenic ySAMdc/azygous control (breaker) | 0.74517 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.25266 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.94019 | 0.27 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.00658 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.09893 | 1 |
Manapal/WT (break) | 1.89049 | 0.183 |
Manapal/WT (red) | 1.16172 | 0.413 |
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