Expression of 1-1-1.1.10.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.819530.173
27DAP/17DAP1.012471
39DAP/27DAP1.202130.796
41DAP/39DAP1.416750.459
42DAP/41DAP1.067361
43DAP/42DAP0.883330.801
47DAP/43DAP0.896930.58
52DAP/47DAP1.427430.731
57DAP/52DAP0.729740.666

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.008291
17DAP/reference0.995880.858
27DAP/reference0.94590.538
39DAP/reference0.894240.188
41DAP/reference1.064730.171
42DAP/reference1.005890.755
43DAP/reference1.103480.118
47DAP/reference0.984450.503
52DAP/reference0.999040.709
57DAP/reference1.028860.662

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.109630.348
27DAP/17DAP0.977210.919
39DAP/27DAP0.953090.784
41DAP/39DAP0.921290.63
42DAP/41DAP1.028040.935
43DAP/42DAP0.895210.224
47DAP/43DAP1.057520.914
52DAP/47DAP1.109130.696
57DAP/52DAP0.988780.81
57DAP/7DAP1.098341

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.282620.039
17DAP/reference0.985910.518
27DAP/reference1.059430.06
39DAP/reference1.229060.019
41DAP/reference1.26260.057
42DAP/reference1.362220.021
43DAP/reference1.348050.01
47DAP/reference1.652210.032
52DAP/reference1.410790.031
57DAP/reference1.135720.117

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.096070.559
17DAP/reference1.130410.448
27DAP/reference1.139030.163
39DAP/reference1.053990.746
41DAP/reference1.062070.799
42DAP/reference1.002540.723
43DAP/reference1.036760.949
47DAP/reference1.020940.994
52DAP/reference0.889040.012
57DAP/reference1.000580.874

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.108550.422
17DAP/reference0.893030.224
27DAP/reference0.98350.539
39DAP/reference1.330070.026
41DAP/reference0.987250.682
42DAP/reference1.162980.251
43DAP/reference1.073840.867
47DAP/reference0.903980.08
52DAP/reference1.347440.09
57DAP/reference1.532170.549

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.014990.966
26DAP/20DAP1.221740.305
34DAP/26DAP1.037361
51DAP/34DAP1.487630.177
52DAP/51DAP1.032080.808
53DAP/52DAP1.174060.537
55DAP/53DAP0.998650.951
57DAP/55DAP0.828230.36
62DAP/57DAP0.856550.681
68DAP/62DAP0.934540.641
68DAP/14DAP1.321710.022

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.135660.347

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.806350.26
Mature Green Tomato/Ripe Tomato1.476330.898
Immature Eggplant/Mature Eggplant1.499160.052
Ripe Pepper/Ripe Tomato1.789150.256
Mature Eggplant/Ripe Tomato1.2960.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.867440.934
1-1-2/M820.95114
12-2/M821.123151
12-4/M820.683220.298
1-3/M821.120811
2-1-1/M820.90610.784
2-1/M821.02834
2-6/M820.850271
3-2/M820.69632
4-1-1/M820.746771
4-1/M821.34468
4-3-2/M820.961181
4-3/M821.208041
5-3/M821.056461
6-2/M820.85078
6-3/M821.058881
7-1/M820.82213
7-2/M820.977131
9-3-2/M820.849431

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.09747
IL2-6/WTpooled1.22840.46
IL7-5/WTpooled1.77301
IL7-3/WTpooled0.571980.31
IL12-4/WTpooled0.895610.71
IL1-4/WTpooled0.887730.476
WT/WTpooled1.084321

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.017361

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.054420.894
DC3000/delta hrp 6h1.155980.978
DC3000/delta hrp 12h1.155061
DC3000/delta hrp 24h0.938670.585

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.973771
DC3000 delta B/DC3000 delta AB1.118530.345

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.218191
Exp 36h1.054051
Exp 60h1.102010.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.977271
Var 0h1.171790.936
Var 12h I row2-row11.066060.544
Var 12h NI row2-row11.029141
Var 36h I row2-row11.091830.742
Var 36h NI row2-row10.977410.61
Var 60h I row2-row10.806320.285
Var 60h NI row2-row11.072590.904
Time course 0hI-0hNI1.035940.833
Time course 12hI-12hNI1.035860.738
Time course 36hI-36hNI1.152560.063
Time course 60hI-60hNI1.32320.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.91940.33
transgenic ySAMdc/azygous control (breaker)0.619880.142
transgenic ySAMdc/azygous control (red)0.932271

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.030520.13

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.587840.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.970171
Manapal/WT (break)1.149460.381
Manapal/WT (red)0.837640.199