Expression of 1-1-1.1.10.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.81953 | 0.173 |
27DAP/17DAP | 1.01247 | 1 |
39DAP/27DAP | 1.20213 | 0.796 |
41DAP/39DAP | 1.41675 | 0.459 |
42DAP/41DAP | 1.06736 | 1 |
43DAP/42DAP | 0.88333 | 0.801 |
47DAP/43DAP | 0.89693 | 0.58 |
52DAP/47DAP | 1.42743 | 0.731 |
57DAP/52DAP | 0.72974 | 0.666 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00829 | 1 |
17DAP/reference | 0.99588 | 0.858 |
27DAP/reference | 0.9459 | 0.538 |
39DAP/reference | 0.89424 | 0.188 |
41DAP/reference | 1.06473 | 0.171 |
42DAP/reference | 1.00589 | 0.755 |
43DAP/reference | 1.10348 | 0.118 |
47DAP/reference | 0.98445 | 0.503 |
52DAP/reference | 0.99904 | 0.709 |
57DAP/reference | 1.02886 | 0.662 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10963 | 0.348 |
27DAP/17DAP | 0.97721 | 0.919 |
39DAP/27DAP | 0.95309 | 0.784 |
41DAP/39DAP | 0.92129 | 0.63 |
42DAP/41DAP | 1.02804 | 0.935 |
43DAP/42DAP | 0.89521 | 0.224 |
47DAP/43DAP | 1.05752 | 0.914 |
52DAP/47DAP | 1.10913 | 0.696 |
57DAP/52DAP | 0.98878 | 0.81 |
57DAP/7DAP | 1.09834 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.28262 | 0.039 |
17DAP/reference | 0.98591 | 0.518 |
27DAP/reference | 1.05943 | 0.06 |
39DAP/reference | 1.22906 | 0.019 |
41DAP/reference | 1.2626 | 0.057 |
42DAP/reference | 1.36222 | 0.021 |
43DAP/reference | 1.34805 | 0.01 |
47DAP/reference | 1.65221 | 0.032 |
52DAP/reference | 1.41079 | 0.031 |
57DAP/reference | 1.13572 | 0.117 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09607 | 0.559 |
17DAP/reference | 1.13041 | 0.448 |
27DAP/reference | 1.13903 | 0.163 |
39DAP/reference | 1.05399 | 0.746 |
41DAP/reference | 1.06207 | 0.799 |
42DAP/reference | 1.00254 | 0.723 |
43DAP/reference | 1.03676 | 0.949 |
47DAP/reference | 1.02094 | 0.994 |
52DAP/reference | 0.88904 | 0.012 |
57DAP/reference | 1.00058 | 0.874 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10855 | 0.422 |
17DAP/reference | 0.89303 | 0.224 |
27DAP/reference | 0.9835 | 0.539 |
39DAP/reference | 1.33007 | 0.026 |
41DAP/reference | 0.98725 | 0.682 |
42DAP/reference | 1.16298 | 0.251 |
43DAP/reference | 1.07384 | 0.867 |
47DAP/reference | 0.90398 | 0.08 |
52DAP/reference | 1.34744 | 0.09 |
57DAP/reference | 1.53217 | 0.549 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01499 | 0.966 |
26DAP/20DAP | 1.22174 | 0.305 |
34DAP/26DAP | 1.03736 | 1 |
51DAP/34DAP | 1.48763 | 0.177 |
52DAP/51DAP | 1.03208 | 0.808 |
53DAP/52DAP | 1.17406 | 0.537 |
55DAP/53DAP | 0.99865 | 0.951 |
57DAP/55DAP | 0.82823 | 0.36 |
62DAP/57DAP | 0.85655 | 0.681 |
68DAP/62DAP | 0.93454 | 0.641 |
68DAP/14DAP | 1.32171 | 0.022 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.13566 | 0.347 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.80635 | 0.26 |
Mature Green Tomato/Ripe Tomato | 1.47633 | 0.898 |
Immature Eggplant/Mature Eggplant | 1.49916 | 0.052 |
Ripe Pepper/Ripe Tomato | 1.78915 | 0.256 |
Mature Eggplant/Ripe Tomato | 1.296 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.86744 | 0.934 |
1-1-2/M82 | 0.95114 | |
12-2/M82 | 1.12315 | 1 |
12-4/M82 | 0.68322 | 0.298 |
1-3/M82 | 1.12081 | 1 |
2-1-1/M82 | 0.9061 | 0.784 |
2-1/M82 | 1.02834 | |
2-6/M82 | 0.85027 | 1 |
3-2/M82 | 0.69632 | |
4-1-1/M82 | 0.74677 | 1 |
4-1/M82 | 1.34468 | |
4-3-2/M82 | 0.96118 | 1 |
4-3/M82 | 1.20804 | 1 |
5-3/M82 | 1.05646 | 1 |
6-2/M82 | 0.85078 | |
6-3/M82 | 1.05888 | 1 |
7-1/M82 | 0.82213 | |
7-2/M82 | 0.97713 | 1 |
9-3-2/M82 | 0.84943 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.09747 | |
IL2-6/WTpooled | 1.2284 | 0.46 |
IL7-5/WTpooled | 1.77301 | |
IL7-3/WTpooled | 0.57198 | 0.31 |
IL12-4/WTpooled | 0.89561 | 0.71 |
IL1-4/WTpooled | 0.88773 | 0.476 |
WT/WTpooled | 1.08432 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.01736 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05442 | 0.894 |
DC3000/delta hrp 6h | 1.15598 | 0.978 |
DC3000/delta hrp 12h | 1.15506 | 1 |
DC3000/delta hrp 24h | 0.93867 | 0.585 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.97377 | 1 |
DC3000 delta B/DC3000 delta AB | 1.11853 | 0.345 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.21819 | 1 |
Exp 36h | 1.05405 | 1 |
Exp 60h | 1.10201 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97727 | 1 |
Var 0h | 1.17179 | 0.936 |
Var 12h I row2-row1 | 1.06606 | 0.544 |
Var 12h NI row2-row1 | 1.02914 | 1 |
Var 36h I row2-row1 | 1.09183 | 0.742 |
Var 36h NI row2-row1 | 0.97741 | 0.61 |
Var 60h I row2-row1 | 0.80632 | 0.285 |
Var 60h NI row2-row1 | 1.07259 | 0.904 |
Time course 0hI-0hNI | 1.03594 | 0.833 |
Time course 12hI-12hNI | 1.03586 | 0.738 |
Time course 36hI-36hNI | 1.15256 | 0.063 |
Time course 60hI-60hNI | 1.3232 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.9194 | 0.33 |
transgenic ySAMdc/azygous control (breaker) | 0.61988 | 0.142 |
transgenic ySAMdc/azygous control (red) | 0.93227 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03052 | 0.13 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.58784 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.97017 | 1 |
Manapal/WT (break) | 1.14946 | 0.381 |
Manapal/WT (red) | 0.83764 | 0.199 |
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