Expression of 1-1-1.1.11.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89829 | 0.532 |
27DAP/17DAP | 3.91502 | 0.622 |
39DAP/27DAP | 1.098 | 0.825 |
41DAP/39DAP | 0.92218 | 0.67 |
42DAP/41DAP | 1.20147 | 0.899 |
43DAP/42DAP | 1.09334 | 1 |
47DAP/43DAP | 0.97505 | 0.895 |
52DAP/47DAP | 2.38275 | 0.496 |
57DAP/52DAP | 1.41488 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9629 | 0.326 |
17DAP/reference | 1.13825 | 0.031 |
27DAP/reference | 1.0214 | 0.981 |
39DAP/reference | 1.04085 | 0.453 |
41DAP/reference | 1.07926 | 0.158 |
42DAP/reference | 0.86908 | 0.005 |
43DAP/reference | 1.04821 | 0.306 |
47DAP/reference | 0.95051 | 0.161 |
52DAP/reference | 1.01143 | 1 |
57DAP/reference | 1.01181 | 0.984 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09883 | 0.65 |
27DAP/17DAP | 1.02427 | 1 |
39DAP/27DAP | 0.72804 | 0.126 |
41DAP/39DAP | 1.05584 | 0.921 |
42DAP/41DAP | 1.22496 | 0.225 |
43DAP/42DAP | 0.97268 | 0.875 |
47DAP/43DAP | 1.02844 | 0.951 |
52DAP/47DAP | 0.84992 | 0.778 |
57DAP/52DAP | 1.18385 | 0.722 |
57DAP/7DAP | 2.1692 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14202 | 0.213 |
17DAP/reference | 1.61618 | 0.007 |
27DAP/reference | 1.42234 | 0.012 |
39DAP/reference | 1.615 | 0.006 |
41DAP/reference | 1.4355 | 0.077 |
42DAP/reference | 1.77499 | 0.006 |
43DAP/reference | 1.54231 | 0.009 |
47DAP/reference | 1.34671 | 0.331 |
52DAP/reference | 1.41132 | 0.012 |
57DAP/reference | 1.53561 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02609 | 0.719 |
17DAP/reference | 0.96732 | 0.378 |
27DAP/reference | 0.87492 | 0.108 |
39DAP/reference | 1.00918 | 1 |
41DAP/reference | 0.84365 | 0.127 |
42DAP/reference | 0.86335 | 0.022 |
43DAP/reference | 0.97317 | 0.569 |
47DAP/reference | 0.95048 | 0.292 |
52DAP/reference | 1.06276 | 0.279 |
57DAP/reference | 1.05307 | 0.64 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.3055 | 0.116 |
17DAP/reference | 1.16782 | 0.689 |
27DAP/reference | 1.73919 | 0.023 |
39DAP/reference | 1.41841 | 0.048 |
41DAP/reference | 1.49258 | 0.044 |
42DAP/reference | 1.31904 | 0.22 |
43DAP/reference | 1.52891 | 0.081 |
47DAP/reference | 0.9099 | 0.259 |
52DAP/reference | 1.57 | 0.076 |
57DAP/reference | 0.96742 | 0.394 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01981 | 0.966 |
26DAP/20DAP | 1.26795 | 0.654 |
34DAP/26DAP | 1.00264 | 1 |
51DAP/34DAP | 1.356 | 0.84 |
52DAP/51DAP | 1.53623 | 0.186 |
53DAP/52DAP | 1.44117 | 0.552 |
55DAP/53DAP | 0.82459 | 0.35 |
57DAP/55DAP | 1.05723 | 0.969 |
62DAP/57DAP | 1.0498 | 0.935 |
68DAP/62DAP | 1.00375 | 0.885 |
68DAP/14DAP | 0.78791 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.68412 | 0.122 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.0405 | 0.068 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.70289 | 1 |
Mature Eggplant/Ripe Tomato | 0.35425 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.04313 | |
IL2-6/WTpooled | 0.58131 | 0.348 |
IL7-5/WTpooled | 0.30864 | |
IL7-3/WTpooled | 1.53168 | 0.362 |
IL12-4/WTpooled | 1.16559 | 0.595 |
IL1-4/WTpooled | 0.98317 | 0.834 |
WT/WTpooled | 1.02234 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.63202 | 0.256 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.89131 | 0.868 |
DC3000/delta hrp 6h | 1.44021 | 1 |
DC3000/delta hrp 12h | 1.20877 | 1 |
DC3000/delta hrp 24h | 0.88032 | 0.412 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.30796 | 0.223 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04564 | 1 |
Var 0h | 0.78105 | 1 |
Var 12h I row2-row1 | 0.98185 | 1 |
Var 12h NI row2-row1 | 1.31236 | 0.281 |
Var 36h I row2-row1 | 1.08207 | 0.41 |
Var 36h NI row2-row1 | 1.01347 | 1 |
Var 60h I row2-row1 | 0.89424 | 0.287 |
Var 60h NI row2-row1 | 0.98135 | 1 |
Time course 0hI-0hNI | 0.93575 | 0.612 |
Time course 12hI-12hNI | 0.88796 | 0.16 |
Time course 36hI-36hNI | 0.87316 | 0.119 |
Time course 60hI-60hNI | 0.79637 | 0.007 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.96592 | 0.722 |
transgenic ySAMdc/azygous control (breaker) | 0.90759 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.23177 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95579 | 0.052 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.72857 | 0.172 |
Manapal/WT (break) | 0.63113 | 0.297 |
Manapal/WT (red) | 0.95572 | 0.863 |
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