Expression of 1-1-1.1.11.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.090470.739
27DAP/17DAP0.918540.833
39DAP/27DAP1.537760.163
41DAP/39DAP0.726480.112
42DAP/41DAP1.170730.929
43DAP/42DAP1.12510.861
47DAP/43DAP0.955610.794
52DAP/47DAP1.098340.873
57DAP/52DAP1.066840.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.813710.098
17DAP/reference0.916320.342
27DAP/reference1.088570.548
39DAP/reference1.227650.203
41DAP/reference1.141470.587
42DAP/reference1.464740.001
43DAP/reference1.517840.008
47DAP/reference1.85110.001
52DAP/reference1.625670.008
57DAP/reference1.424160.012

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.929810.454
27DAP/17DAP1.066370.831
39DAP/27DAP1.214980.197
41DAP/39DAP0.833170.372
42DAP/41DAP1.093410.694
43DAP/42DAP1.131690.23
47DAP/43DAP1.101480.5
52DAP/47DAP1.052320.789
57DAP/52DAP1.167560.335
57DAP/7DAP1.038690.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.956150.402
17DAP/reference0.922750.144
27DAP/reference0.987070.571
39DAP/reference1.086340.149
41DAP/reference1.049250.701
42DAP/reference1.240760.021
43DAP/reference1.280560.006
47DAP/reference1.24830.018
52DAP/reference1.112580.149
57DAP/reference0.999070.648

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.805690.015
17DAP/reference0.914980.269
27DAP/reference1.134570.535
39DAP/reference1.030451
41DAP/reference1.003421
42DAP/reference1.155330.254
43DAP/reference1.106020.793
47DAP/reference1.175550.176
52DAP/reference0.724250.004
57DAP/reference0.79930.063

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.936550.391
17DAP/reference0.825390.177
27DAP/reference0.9410.174
39DAP/reference0.995680.755
41DAP/reference0.971450.119
42DAP/reference1.254960.043
43DAP/reference1.334510.021
47DAP/reference1.267310.099
52DAP/reference1.594640.033
57DAP/reference1.724280.008

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.744350.585
26DAP/20DAP1.307110.342
34DAP/26DAP0.996711
51DAP/34DAP1.257150.215
52DAP/51DAP0.752130.151
53DAP/52DAP1.270030.082
55DAP/53DAP0.831980.111
57DAP/55DAP1.257680.779
62DAP/57DAP0.68730.01
68DAP/62DAP0.90040.668
68DAP/14DAP1.066131

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.078610.821

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.849270.318
Mature Green Tomato/Ripe Tomato0.538080.017
Immature Eggplant/Mature Eggplant1.368870.052
Ripe Pepper/Ripe Tomato1.172821
Mature Eggplant/Ripe Tomato0.670410.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.155520.877
1-1-2/M821.318431
12-2/M820.968510.955
12-4/M821.260731
1-3/M821.926730.248
2-1-1/M821.095950.764
2-1/M820.807340.345
2-6/M820.881221
3-2/M821.061590.967
4-1-1/M821.130951
4-1/M822.122330.295
4-3-2/M821.166890.508
4-3/M821.427941
5-3/M820.902450.642
6-2/M821.238841
6-3/M821.046211
7-1/M821.139591
7-2/M821.234391
9-3-2/M821.32391

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.71711
IL2-6/WTpooled1.005111
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.929110.294
IL12-4/WTpooled0.933081
IL1-4/WTpooled0.90986
WT/WTpooled1.013381

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.087760.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.060930.758
DC3000/delta hrp 6h1.021491
DC3000/delta hrp 12h1.02581
DC3000/delta hrp 24h0.915230.338

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.449380.121
DC3000 delta B/DC3000 delta AB1.147820.261

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.315841
Exp 36h1.094771
Exp 60h1.135750.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.990111
Var 0h0.929711
Var 12h I row2-row11.006331
Var 12h NI row2-row11.001221
Var 36h I row2-row11.07520.305
Var 36h NI row2-row11.003111
Var 60h I row2-row10.797340.832
Var 60h NI row2-row10.889370.818
Time course 0hI-0hNI1.018221
Time course 12hI-12hNI0.975680.836
Time course 36hI-36hNI1.078480.218
Time course 60hI-60hNI1.087120.187

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.955550.567
transgenic ySAMdc/azygous control (breaker)0.600990.125
transgenic ySAMdc/azygous control (red)0.939531

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.197870.077

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.954220.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.857811
Manapal/WT (break)1.107040.14
Manapal/WT (red)0.800570.199