Expression of 1-1-1.1.11.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09047 | 0.739 |
27DAP/17DAP | 0.91854 | 0.833 |
39DAP/27DAP | 1.53776 | 0.163 |
41DAP/39DAP | 0.72648 | 0.112 |
42DAP/41DAP | 1.17073 | 0.929 |
43DAP/42DAP | 1.1251 | 0.861 |
47DAP/43DAP | 0.95561 | 0.794 |
52DAP/47DAP | 1.09834 | 0.873 |
57DAP/52DAP | 1.06684 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81371 | 0.098 |
17DAP/reference | 0.91632 | 0.342 |
27DAP/reference | 1.08857 | 0.548 |
39DAP/reference | 1.22765 | 0.203 |
41DAP/reference | 1.14147 | 0.587 |
42DAP/reference | 1.46474 | 0.001 |
43DAP/reference | 1.51784 | 0.008 |
47DAP/reference | 1.8511 | 0.001 |
52DAP/reference | 1.62567 | 0.008 |
57DAP/reference | 1.42416 | 0.012 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92981 | 0.454 |
27DAP/17DAP | 1.06637 | 0.831 |
39DAP/27DAP | 1.21498 | 0.197 |
41DAP/39DAP | 0.83317 | 0.372 |
42DAP/41DAP | 1.09341 | 0.694 |
43DAP/42DAP | 1.13169 | 0.23 |
47DAP/43DAP | 1.10148 | 0.5 |
52DAP/47DAP | 1.05232 | 0.789 |
57DAP/52DAP | 1.16756 | 0.335 |
57DAP/7DAP | 1.03869 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95615 | 0.402 |
17DAP/reference | 0.92275 | 0.144 |
27DAP/reference | 0.98707 | 0.571 |
39DAP/reference | 1.08634 | 0.149 |
41DAP/reference | 1.04925 | 0.701 |
42DAP/reference | 1.24076 | 0.021 |
43DAP/reference | 1.28056 | 0.006 |
47DAP/reference | 1.2483 | 0.018 |
52DAP/reference | 1.11258 | 0.149 |
57DAP/reference | 0.99907 | 0.648 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80569 | 0.015 |
17DAP/reference | 0.91498 | 0.269 |
27DAP/reference | 1.13457 | 0.535 |
39DAP/reference | 1.03045 | 1 |
41DAP/reference | 1.00342 | 1 |
42DAP/reference | 1.15533 | 0.254 |
43DAP/reference | 1.10602 | 0.793 |
47DAP/reference | 1.17555 | 0.176 |
52DAP/reference | 0.72425 | 0.004 |
57DAP/reference | 0.7993 | 0.063 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93655 | 0.391 |
17DAP/reference | 0.82539 | 0.177 |
27DAP/reference | 0.941 | 0.174 |
39DAP/reference | 0.99568 | 0.755 |
41DAP/reference | 0.97145 | 0.119 |
42DAP/reference | 1.25496 | 0.043 |
43DAP/reference | 1.33451 | 0.021 |
47DAP/reference | 1.26731 | 0.099 |
52DAP/reference | 1.59464 | 0.033 |
57DAP/reference | 1.72428 | 0.008 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.74435 | 0.585 |
26DAP/20DAP | 1.30711 | 0.342 |
34DAP/26DAP | 0.99671 | 1 |
51DAP/34DAP | 1.25715 | 0.215 |
52DAP/51DAP | 0.75213 | 0.151 |
53DAP/52DAP | 1.27003 | 0.082 |
55DAP/53DAP | 0.83198 | 0.111 |
57DAP/55DAP | 1.25768 | 0.779 |
62DAP/57DAP | 0.6873 | 0.01 |
68DAP/62DAP | 0.9004 | 0.668 |
68DAP/14DAP | 1.06613 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.07861 | 0.821 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.84927 | 0.318 |
Mature Green Tomato/Ripe Tomato | 0.53808 | 0.017 |
Immature Eggplant/Mature Eggplant | 1.36887 | 0.052 |
Ripe Pepper/Ripe Tomato | 1.17282 | 1 |
Mature Eggplant/Ripe Tomato | 0.67041 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.15552 | 0.877 |
1-1-2/M82 | 1.31843 | 1 |
12-2/M82 | 0.96851 | 0.955 |
12-4/M82 | 1.26073 | 1 |
1-3/M82 | 1.92673 | 0.248 |
2-1-1/M82 | 1.09595 | 0.764 |
2-1/M82 | 0.80734 | 0.345 |
2-6/M82 | 0.88122 | 1 |
3-2/M82 | 1.06159 | 0.967 |
4-1-1/M82 | 1.13095 | 1 |
4-1/M82 | 2.12233 | 0.295 |
4-3-2/M82 | 1.16689 | 0.508 |
4-3/M82 | 1.42794 | 1 |
5-3/M82 | 0.90245 | 0.642 |
6-2/M82 | 1.23884 | 1 |
6-3/M82 | 1.04621 | 1 |
7-1/M82 | 1.13959 | 1 |
7-2/M82 | 1.23439 | 1 |
9-3-2/M82 | 1.3239 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.71711 | |
IL2-6/WTpooled | 1.00511 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.92911 | 0.294 |
IL12-4/WTpooled | 0.93308 | 1 |
IL1-4/WTpooled | 0.90986 | |
WT/WTpooled | 1.01338 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.08776 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06093 | 0.758 |
DC3000/delta hrp 6h | 1.02149 | 1 |
DC3000/delta hrp 12h | 1.0258 | 1 |
DC3000/delta hrp 24h | 0.91523 | 0.338 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.44938 | 0.121 |
DC3000 delta B/DC3000 delta AB | 1.14782 | 0.261 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.31584 | 1 |
Exp 36h | 1.09477 | 1 |
Exp 60h | 1.13575 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99011 | 1 |
Var 0h | 0.92971 | 1 |
Var 12h I row2-row1 | 1.00633 | 1 |
Var 12h NI row2-row1 | 1.00122 | 1 |
Var 36h I row2-row1 | 1.0752 | 0.305 |
Var 36h NI row2-row1 | 1.00311 | 1 |
Var 60h I row2-row1 | 0.79734 | 0.832 |
Var 60h NI row2-row1 | 0.88937 | 0.818 |
Time course 0hI-0hNI | 1.01822 | 1 |
Time course 12hI-12hNI | 0.97568 | 0.836 |
Time course 36hI-36hNI | 1.07848 | 0.218 |
Time course 60hI-60hNI | 1.08712 | 0.187 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.95555 | 0.567 |
transgenic ySAMdc/azygous control (breaker) | 0.60099 | 0.125 |
transgenic ySAMdc/azygous control (red) | 0.93953 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.19787 | 0.077 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.95422 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.85781 | 1 |
Manapal/WT (break) | 1.10704 | 0.14 |
Manapal/WT (red) | 0.80057 | 0.199 |
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