Expression of 1-1-1.1.12.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.253860.561
27DAP/17DAP1.289670.973
39DAP/27DAP0.706170.573
41DAP/39DAP1.073240.788
42DAP/41DAP0.758320.774
43DAP/42DAP1.295360.662
47DAP/43DAP0.875770.55
52DAP/47DAP1.081810.994
57DAP/52DAP1.169610.996

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/referenceN/AN/A
27DAP/referenceN/AN/A
39DAP/reference1.03655
41DAP/reference0.40726
42DAP/reference0.95703
43DAP/referenceN/AN/A
47DAP/reference0.812150.09
52DAP/referenceN/AN/A
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAPN/AN/A
27DAP/17DAP10.0394
39DAP/27DAP0.96354
41DAP/39DAPN/AN/A
42DAP/41DAPN/AN/A
43DAP/42DAP0.948080.902
47DAP/43DAP1.79039
52DAP/47DAP2.23936
57DAP/52DAP1.64292
57DAP/7DAP1.4983

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.286650.124
17DAP/reference1.154460.032
27DAP/reference1.344490.009
39DAP/reference1.252940.006
41DAP/reference1.206480.104
42DAP/reference1.481560.009
43DAP/reference1.414560.035
47DAP/reference1.724670.158
52DAP/reference1.400940.052
57DAP/reference1.120250.214

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.50002
17DAP/reference1.334860.658
27DAP/reference0.89439
39DAP/referenceN/AN/A
41DAP/reference0.770670.005
42DAP/reference0.80382
43DAP/reference1.155220.54
47DAP/referenceN/AN/A
52DAP/reference0.969670.666
57DAP/referenceN/AN/A

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.408070.052
17DAP/reference1.027530.855
27DAP/reference1.172540.033
39DAP/reference1.567820.007
41DAP/reference1.208030.15
42DAP/reference1.399990.021
43DAP/reference1.306840.037
47DAP/reference1.168460.179
52DAP/reference1.479050.038
57DAP/reference2.358830.771

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.8732
26DAP/20DAPN/AN/A
34DAP/26DAPN/AN/A
51DAP/34DAP0.80856
52DAP/51DAP0.80755
53DAP/52DAP0.846680.604
55DAP/53DAP0.56201
57DAP/55DAP0.769590.452
62DAP/57DAP1.27494
68DAP/62DAPN/AN/A
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper BreakerN/AN/A

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper5.95843
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.076880.277
IL2-6/WTpooled1.003641
IL7-5/WTpooled0.79497
IL7-3/WTpooled1.073171
IL12-4/WTpooled1.199190.646
IL1-4/WTpooled1.060791
WT/WTpooled0.920251

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.045140.594
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A