Expression of 1-1-1.1.12.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.74032 | 0.238 |
27DAP/17DAP | 1.04516 | 1 |
39DAP/27DAP | 1.0833 | 0.919 |
41DAP/39DAP | 0.8293 | 0.485 |
42DAP/41DAP | 0.95543 | 1 |
43DAP/42DAP | 1.27113 | 0.772 |
47DAP/43DAP | 0.82401 | 0.444 |
52DAP/47DAP | 0.86434 | 0.619 |
57DAP/52DAP | 0.97438 | 0.956 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | N/A | N/A |
17DAP/reference | 0.49998 | |
27DAP/reference | N/A | N/A |
39DAP/reference | 1.09102 | |
41DAP/reference | 0.91402 | 0.814 |
42DAP/reference | N/A | N/A |
43DAP/reference | N/A | N/A |
47DAP/reference | 1.2032 | 0.989 |
52DAP/reference | 0.5742 | |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.37036 | 0.719 |
27DAP/17DAP | 2.27944 | 0.403 |
39DAP/27DAP | 0.99761 | 0.919 |
41DAP/39DAP | 1.09378 | |
42DAP/41DAP | 0.79886 | 0.478 |
43DAP/42DAP | 1.82325 | |
47DAP/43DAP | 0.56378 | |
52DAP/47DAP | 1.18269 | 0.804 |
57DAP/52DAP | 0.72285 | |
57DAP/7DAP | 0.47309 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.66165 | 0.056 |
17DAP/reference | 0.84053 | 0.021 |
27DAP/reference | 0.97043 | 0.53 |
39DAP/reference | 0.72742 | 0.015 |
41DAP/reference | 0.68853 | 0.027 |
42DAP/reference | 0.764 | 0.01 |
43DAP/reference | 0.68951 | 0.012 |
47DAP/reference | 0.64264 | 0.034 |
52DAP/reference | 0.78509 | 0.049 |
57DAP/reference | 0.76571 | 0.009 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01558 | |
17DAP/reference | 2.0339 | |
27DAP/reference | 0.7092 | |
39DAP/reference | 0.7586 | |
41DAP/reference | 1.2244 | 0.293 |
42DAP/reference | 1.04631 | |
43DAP/reference | 1.29565 | 0.59 |
47DAP/reference | 0.51713 | |
52DAP/reference | N/A | N/A |
57DAP/reference | 4.8864 | |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.79698 | 0.039 |
17DAP/reference | 0.98666 | 0.709 |
27DAP/reference | 0.76682 | 0.039 |
39DAP/reference | 0.96685 | 0.464 |
41DAP/reference | 0.91097 | 0.237 |
42DAP/reference | 0.80118 | 0.059 |
43DAP/reference | 0.81654 | 0.031 |
47DAP/reference | 1.24333 | 0.655 |
52DAP/reference | 0.90506 | 0.36 |
57DAP/reference | 0.65456 | |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.48671 | |
26DAP/20DAP | N/A | N/A |
34DAP/26DAP | N/A | N/A |
51DAP/34DAP | N/A | N/A |
52DAP/51DAP | 0.95509 | |
53DAP/52DAP | 0.81375 | 0.177 |
55DAP/53DAP | 1.84727 | 0.2 |
57DAP/55DAP | 0.67132 | |
62DAP/57DAP | 0.96325 | 0.088 |
68DAP/62DAP | N/A | N/A |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | N/A | N/A |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.33356 | |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.95592 | 1 |
IL12-4/WTpooled | 0.7317 | |
IL1-4/WTpooled | 1.11011 | 1 |
WT/WTpooled | 0.83548 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.13018 | 1 |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.00298 | 1 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | N/A | N/A |
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