Expression of 1-1-1.1.12.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.740320.238
27DAP/17DAP1.045161
39DAP/27DAP1.08330.919
41DAP/39DAP0.82930.485
42DAP/41DAP0.955431
43DAP/42DAP1.271130.772
47DAP/43DAP0.824010.444
52DAP/47DAP0.864340.619
57DAP/52DAP0.974380.956

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/reference0.49998
27DAP/referenceN/AN/A
39DAP/reference1.09102
41DAP/reference0.914020.814
42DAP/referenceN/AN/A
43DAP/referenceN/AN/A
47DAP/reference1.20320.989
52DAP/reference0.5742
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.370360.719
27DAP/17DAP2.279440.403
39DAP/27DAP0.997610.919
41DAP/39DAP1.09378
42DAP/41DAP0.798860.478
43DAP/42DAP1.82325
47DAP/43DAP0.56378
52DAP/47DAP1.182690.804
57DAP/52DAP0.72285
57DAP/7DAP0.47309

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.661650.056
17DAP/reference0.840530.021
27DAP/reference0.970430.53
39DAP/reference0.727420.015
41DAP/reference0.688530.027
42DAP/reference0.7640.01
43DAP/reference0.689510.012
47DAP/reference0.642640.034
52DAP/reference0.785090.049
57DAP/reference0.765710.009

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.01558
17DAP/reference2.0339
27DAP/reference0.7092
39DAP/reference0.7586
41DAP/reference1.22440.293
42DAP/reference1.04631
43DAP/reference1.295650.59
47DAP/reference0.51713
52DAP/referenceN/AN/A
57DAP/reference4.8864

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.796980.039
17DAP/reference0.986660.709
27DAP/reference0.766820.039
39DAP/reference0.966850.464
41DAP/reference0.910970.237
42DAP/reference0.801180.059
43DAP/reference0.816540.031
47DAP/reference1.243330.655
52DAP/reference0.905060.36
57DAP/reference0.65456

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.48671
26DAP/20DAPN/AN/A
34DAP/26DAPN/AN/A
51DAP/34DAPN/AN/A
52DAP/51DAP0.95509
53DAP/52DAP0.813750.177
55DAP/53DAP1.847270.2
57DAP/55DAP0.67132
62DAP/57DAP0.963250.088
68DAP/62DAPN/AN/A
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper BreakerN/AN/A

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.33356
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.955921
IL12-4/WTpooled0.7317
IL1-4/WTpooled1.110111
WT/WTpooled0.835481

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.130181
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.002981
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A