Expression of 1-1-1.1.12.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02357 | 0.977 |
27DAP/17DAP | 1.26844 | 0.842 |
39DAP/27DAP | 0.87334 | 0.529 |
41DAP/39DAP | 0.90275 | 0.602 |
42DAP/41DAP | 1.20296 | 0.752 |
43DAP/42DAP | 1.29274 | 0.505 |
47DAP/43DAP | 1.17801 | 0.448 |
52DAP/47DAP | 1.21501 | 0.624 |
57DAP/52DAP | 1.36058 | 0.354 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97282 | 0.55 |
17DAP/reference | 1.08814 | 0.442 |
27DAP/reference | 1.1502 | 0.098 |
39DAP/reference | 1.20057 | 0.393 |
41DAP/reference | 1.08595 | 0.667 |
42DAP/reference | 0.94792 | 0.25 |
43DAP/reference | 0.95537 | 0.576 |
47DAP/reference | 1.0718 | 0.627 |
52DAP/reference | 0.90944 | 0.267 |
57DAP/reference | 0.82737 | 0.056 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07849 | 0.797 |
27DAP/17DAP | 0.99559 | 0.943 |
39DAP/27DAP | 1.04697 | 0.707 |
41DAP/39DAP | 0.95255 | 0.849 |
42DAP/41DAP | 1.10174 | 0.622 |
43DAP/42DAP | 0.79766 | 0.049 |
47DAP/43DAP | 0.97015 | 0.861 |
52DAP/47DAP | 1.98566 | 0.048 |
57DAP/52DAP | 1.84019 | 0.036 |
57DAP/7DAP | 0.30429 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.14431 | 0.427 |
17DAP/reference | 0.98081 | 0.518 |
27DAP/reference | 1.10423 | 0.453 |
39DAP/reference | 1.07551 | 0.74 |
41DAP/reference | 1.00988 | 0.619 |
42DAP/reference | 0.95796 | 0.415 |
43DAP/reference | 1.11945 | 0.093 |
47DAP/reference | 1.17477 | 0.195 |
52DAP/reference | 1.0554 | 0.732 |
57DAP/reference | 1.10284 | 0.214 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09769 | 0.325 |
17DAP/reference | 1.50709 | 0.037 |
27DAP/reference | 1.06822 | 0.847 |
39DAP/reference | 1.19007 | 0.588 |
41DAP/reference | 0.86609 | 0.064 |
42DAP/reference | 0.90863 | 0.289 |
43DAP/reference | 0.98781 | 0.692 |
47DAP/reference | 1.12561 | 0.112 |
52DAP/reference | 0.98934 | 0.666 |
57DAP/reference | 1.00351 | 0.789 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.42124 | 0.02 |
17DAP/reference | 1.05026 | 0.792 |
27DAP/reference | 0.92336 | 0.319 |
39DAP/reference | 1.10466 | 0.084 |
41DAP/reference | 1.00938 | 1 |
42DAP/reference | 1.07303 | 0.529 |
43DAP/reference | 1.05808 | 0.721 |
47DAP/reference | 1.03795 | 1 |
52DAP/reference | 1.28025 | 0.1 |
57DAP/reference | 0.99346 | 0.693 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.07368 | |
26DAP/20DAP | 1.2074 | 1 |
34DAP/26DAP | 1.49922 | 1 |
51DAP/34DAP | 0.94442 | 0.64 |
52DAP/51DAP | 2.24643 | 0.071 |
53DAP/52DAP | 0.86329 | 0.259 |
55DAP/53DAP | 1.73346 | 0.208 |
57DAP/55DAP | 0.74823 | 0.162 |
62DAP/57DAP | 0.99288 | 1 |
68DAP/62DAP | 1.20356 | 0.977 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.37214 | 0.02 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.98321 | 0.826 |
Mature Green Tomato/Ripe Tomato | 1.6096 | 0.086 |
Immature Eggplant/Mature Eggplant | 0.4766 | 0.144 |
Ripe Pepper/Ripe Tomato | 4.80428 | 0.251 |
Mature Eggplant/Ripe Tomato | 1.87794 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.91034 | 0.944 |
1-1-2/M82 | 1.0171 | 1 |
12-2/M82 | 0.49427 | |
12-4/M82 | 0.84599 | 0.33 |
1-3/M82 | 0.75173 | 0.378 |
2-1-1/M82 | 1.09296 | 0.689 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.09911 | 0.594 |
3-2/M82 | 0.79821 | |
4-1-1/M82 | 1.47889 | |
4-1/M82 | 1.15501 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.1001 | 1 |
5-3/M82 | 1.04779 | 1 |
6-2/M82 | 0.92816 | |
6-3/M82 | 1.12901 | 1 |
7-1/M82 | 0.93309 | |
7-2/M82 | 0.87364 | 0.796 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.06786 | 0.493 |
IL2-6/WTpooled | 1.02956 | 1 |
IL7-5/WTpooled | 0.77765 | |
IL7-3/WTpooled | 1.09358 | 1 |
IL12-4/WTpooled | 0.75425 | 0.71 |
IL1-4/WTpooled | 1.02403 | 1 |
WT/WTpooled | 0.87681 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.02589 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.10648 | 0.758 |
DC3000/delta hrp 6h | 0.61264 | 0.942 |
DC3000/delta hrp 12h | 1.04275 | 1 |
DC3000/delta hrp 24h | 1.16507 | 0.264 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.2911 | 0.087 |
DC3000 delta B/DC3000 delta AB | 0.9127 | 0.497 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.97698 | 1 |
Exp 36h | 0.55266 | 0.374 |
Exp 60h | 0.8951 | 0.664 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00257 | 1 |
Var 0h | 0.86625 | 1 |
Var 12h I row2-row1 | 0.75008 | 0.418 |
Var 12h NI row2-row1 | 0.82762 | 0.546 |
Var 36h I row2-row1 | 1.02687 | 1 |
Var 36h NI row2-row1 | 0.85676 | 0.549 |
Var 60h I row2-row1 | 1.15016 | 1 |
Var 60h NI row2-row1 | 0.99121 | 1 |
Time course 0hI-0hNI | 1.00705 | 0.867 |
Time course 12hI-12hNI | 0.93407 | 0.375 |
Time course 36hI-36hNI | 0.82441 | 0.023 |
Time course 60hI-60hNI | 0.52582 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.88613 | 0.286 |
transgenic ySAMdc/azygous control (breaker) | 0.85789 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.87556 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.05154 | 0.177 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.98233 | 0.789 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.75981 | 0.172 |
Manapal/WT (break) | 0.92718 | 1 |
Manapal/WT (red) | 1.3979 | 0.133 |
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