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Expression of 1-1-1.1.13.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.962060.743
27DAP/17DAP1.222750.847
39DAP/27DAP0.897090.573
41DAP/39DAP1.232650.37
42DAP/41DAP0.938471
43DAP/42DAP0.97680.925
47DAP/43DAP0.899090.663
52DAP/47DAP1.304830.441
57DAP/52DAP0.995590.982

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.974440.422
17DAP/reference0.982240.536
27DAP/reference1.02840.509
39DAP/reference0.991610.841
41DAP/reference1.023410.587
42DAP/reference0.957510.151
43DAP/reference0.986980.708
47DAP/reference0.929290.011
52DAP/reference0.991420.618
57DAP/reference0.926220.074

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.039330.719
27DAP/17DAP0.985380.919
39DAP/27DAP1.01390.751
41DAP/39DAP1.049520.719
42DAP/41DAP1.025390.861
43DAP/42DAP1.009180.746
47DAP/43DAP1.031420.884
52DAP/47DAP1.043390.868
57DAP/52DAP1.045110.718
57DAP/7DAP1.071671

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.936920.129
17DAP/reference1.02170.477
27DAP/reference1.002291
39DAP/reference0.990320.552
41DAP/reference1.012820.767
42DAP/reference1.052420.308
43DAP/reference1.023630.307
47DAP/reference0.956890.383
52DAP/reference0.994980.621
57DAP/reference1.01540.851

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.000890.97
17DAP/reference1.003480.898
27DAP/reference1.000141
39DAP/reference0.968860.314
41DAP/reference1.054190.737
42DAP/reference0.910090.073
43DAP/reference1.048620.704
47DAP/reference0.955780.368
52DAP/reference0.984690.259
57DAP/reference0.959880.278

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.938280.092
17DAP/reference0.954010.322
27DAP/reference1.043380.284
39DAP/reference1.032380.39
41DAP/reference0.999511
42DAP/reference0.950060.028
43DAP/reference0.995770.796
47DAP/reference0.892030.139
52DAP/reference1.004910.99
57DAP/reference0.782330.078

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.024550.966
26DAP/20DAP0.932431
34DAP/26DAP0.935790.509
51DAP/34DAP1.072610.706
52DAP/51DAP1.017630.873
53DAP/52DAP0.911210.281
55DAP/53DAP1.164880.229
57DAP/55DAP0.955240.855
62DAP/57DAP0.995531
68DAP/62DAP1.061280.707
68DAP/14DAP1.155730.17

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.038010.558

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.290360.417
Mature Green Tomato/Ripe Tomato0.711190.148
Immature Eggplant/Mature Eggplant0.60724N/A
Ripe Pepper/Ripe Tomato0.186440.224
Mature Eggplant/Ripe Tomato0.207730.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.977870.944
1-1-2/M820.808491
12-2/M821.003191
12-4/M820.927451
1-3/M820.931250.351
2-1-1/M821.091611
2-1/M82N/AN/A
2-6/M820.920211
3-2/M821.047390.717
4-1-1/M821.021071
4-1/M820.991381
4-3-2/M820.898840.698
4-3/M820.974571
5-3/M820.941781
6-2/M821.03231
6-3/M820.968840.982
7-1/M820.882681
7-2/M821.035551
9-3-2/M820.878070.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.490060.584
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.684550.418
IL12-4/WTpooled1.145980.839
IL1-4/WTpooled0.915970.834
WT/WTpooled1.037521

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.321561

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.055910.921
DC3000/delta hrp 6h1.844861
DC3000/delta hrp 12h1.009471
DC3000/delta hrp 24h1.153030.422

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.110520.063
DC3000 delta B/DC3000 delta AB1.113350.381

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.15631
Exp 36h1.478690.693
Exp 60h1.152780.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.897281
Var 0h0.833670.933
Var 12h I row2-row11.159050.198
Var 12h NI row2-row11.052341
Var 36h I row2-row10.995591
Var 36h NI row2-row11.04061
Var 60h I row2-row11.280780.562
Var 60h NI row2-row10.923270.977
Time course 0hI-0hNI1.196950.799
Time course 12hI-12hNI1.037160.754
Time course 36hI-36hNI1.089470.453
Time course 60hI-60hNI1.227870.025

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.180220.289
transgenic ySAMdc/azygous control (breaker)0.741280.142
transgenic ySAMdc/azygous control (red)1.255790.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.011260.495

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.632770.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.750410.172
Manapal/WT (break)0.480830.333
Manapal/WT (red)0.859220.607