Expression of 1-1-1.1.13.7
Experiment: Wild type tomato fruit development (set 1)
| hybridization | ratio | FDR (corrected p value) |
|---|
| 17DAP/7DAP | 1.07847 | 0.63 |
| 27DAP/17DAP | 1.1233 | 0.845 |
| 39DAP/27DAP | 0.93258 | 0.62 |
| 41DAP/39DAP | 0.98817 | 0.89 |
| 42DAP/41DAP | 1.01589 | 1 |
| 43DAP/42DAP | 1.06035 | 1 |
| 47DAP/43DAP | 0.86484 | 0.568 |
| 52DAP/47DAP | 0.82461 | 0.564 |
| 57DAP/52DAP | 0.94707 | 0.908 |
Experiment: Wild type tomato fruit development (set 2)
| hybridization | ratio | FDR (corrected p value) |
|---|
| 7DAP/reference | 0.88712 | 0.062 |
| 17DAP/reference | 0.9835 | 0.664 |
| 27DAP/reference | 1.0054 | 0.934 |
| 39DAP/reference | 1.03097 | 0.524 |
| 41DAP/reference | 1.0043 | 0.963 |
| 42DAP/reference | 1.04509 | 0.324 |
| 43DAP/reference | 1.02136 | 0.678 |
| 47DAP/reference | 1.05789 | 0.048 |
| 52DAP/reference | 0.93985 | 0.275 |
| 57DAP/reference | 1.04842 | 0.704 |
Experiment: tomato Never-ripe mutant fruit development
| hybridization | ratio | FDR (corrected p value) |
|---|
| 17DAP/7DAP | 0.98575 | 0.75 |
| 27DAP/17DAP | 1.032 | 0.905 |
| 39DAP/27DAP | 0.96731 | 0.507 |
| 41DAP/39DAP | 1.06699 | 0.641 |
| 42DAP/41DAP | 1.0107 | 0.976 |
| 43DAP/42DAP | 0.99353 | 0.902 |
| 47DAP/43DAP | 1.00131 | 0.973 |
| 52DAP/47DAP | 0.98365 | 0.9 |
| 57DAP/52DAP | 0.98342 | 0.768 |
| 57DAP/7DAP | 0.94473 | 1 |
Experiment: tomato rin mutant fruit development
| hybridization | ratio | FDR (corrected p value) |
|---|
| 7DAP/reference | 0.91674 | 0.146 |
| 17DAP/reference | 0.8944 | 0.044 |
| 27DAP/reference | 1.03946 | 0.453 |
| 39DAP/reference | 0.89026 | 0.021 |
| 41DAP/reference | 0.9601 | 0.213 |
| 42DAP/reference | 0.99752 | 0.713 |
| 43DAP/reference | 0.91005 | 0.019 |
| 47DAP/reference | 0.88996 | 0.044 |
| 52DAP/reference | 0.84411 | 0.057 |
| 57DAP/reference | 0.8527 | 0.009 |
Experiment: tomato nor mutant fruit development
| hybridization | ratio | FDR (corrected p value) |
|---|
| 7DAP/reference | 1.00384 | 0.943 |
| 17DAP/reference | 0.94639 | 0.046 |
| 27DAP/reference | 1.00265 | 1 |
| 39DAP/reference | 0.93955 | 0.168 |
| 41DAP/reference | 1.29479 | 0.382 |
| 42DAP/reference | 1.16292 | 0.324 |
| 43DAP/reference | 1.0393 | 0.553 |
| 47DAP/reference | 1.06181 | 0.159 |
| 52DAP/reference | 0.96367 | 0.093 |
| 57DAP/reference | 0.97734 | 0.46 |
Experiment: tomato hp1 mutant fruit development
| hybridization | ratio | FDR (corrected p value) |
|---|
| 7DAP/reference | 1.00384 | 1 |
| 17DAP/reference | 1.01565 | 0.932 |
| 27DAP/reference | 0.97709 | 0.286 |
| 39DAP/reference | 0.85028 | 0.024 |
| 41DAP/reference | 0.92766 | 0.032 |
| 42DAP/reference | 0.95226 | 0.361 |
| 43DAP/reference | 0.92194 | 0.044 |
| 47DAP/reference | 1.09776 | 0.187 |
| 52DAP/reference | 1.07601 | 0.534 |
| 57DAP/reference | 1.07616 | 0.57 |
Experiment: Wild type pepper fruit development
| hybridization | ratio | FDR (corrected p value) |
|---|
| 20DAP/14DAP | 0.99203 | 1 |
| 26DAP/20DAP | 1.02808 | 0.931 |
| 34DAP/26DAP | 1.07679 | 0.126 |
| 51DAP/34DAP | 1.0195 | 0.925 |
| 52DAP/51DAP | 1.0369 | 0.662 |
| 53DAP/52DAP | 1.01769 | 0.901 |
| 55DAP/53DAP | 0.84589 | 0.478 |
| 57DAP/55DAP | 1.66813 | 0.805 |
| 62DAP/57DAP | 0.99664 | 1 |
| 68DAP/62DAP | 1.03942 | 0.944 |
| 68DAP/14DAP | 0.93137 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
| hybridization | ratio | FDR (corrected p value) |
|---|
| Tomato Breaker/Pepper Breaker | 1.05435 | 0.229 |
Experiment: Solanaceae fruit comparison
| hybridization | ratio | FDR (corrected p value) |
|---|
| Green Pepper/Ripe Pepper | 1.12945 | 0.176 |
| Mature Green Tomato/Ripe Tomato | 0.56157 | 0.026 |
| Immature Eggplant/Mature Eggplant | 1.27613 | 0.063 |
| Ripe Pepper/Ripe Tomato | 0.13738 | 0.224 |
| Mature Eggplant/Ripe Tomato | 0.12315 | 0.234 |
Experiment: IL carotenoid
| hybridization | ratio | FDR (corrected p value) |
|---|
| 11-1/M82 | 0.9508 | 0.841 |
| 1-1-2/M82 | 1.02899 | 1 |
| 12-2/M82 | 0.93475 | 0.955 |
| 12-4/M82 | 0.99606 | 1 |
| 1-3/M82 | 0.97432 | 0.441 |
| 2-1-1/M82 | 0.92171 | 0.92 |
| 2-1/M82 | 1.2488 | 1 |
| 2-6/M82 | 0.91603 | 1 |
| 3-2/M82 | 0.97946 | 1 |
| 4-1-1/M82 | 1.04415 | 1 |
| 4-1/M82 | 1.07237 | 1 |
| 4-3-2/M82 | 1.08319 | 0.232 |
| 4-3/M82 | 0.92623 | 0.72 |
| 5-3/M82 | 0.97911 | 1 |
| 6-2/M82 | 1.07746 | 1 |
| 6-3/M82 | 1.01716 | 1 |
| 7-1/M82 | 1.05376 | 0.587 |
| 7-2/M82 | 0.94719 | 0.796 |
| 9-3-2/M82 | 0.98003 | 1 |
Experiment: Tomato introgression line transcript analysis
| hybridization | ratio | FDR (corrected p value) |
|---|
| IL4-4/WTpooled | 1.42186 | 0.277 |
| IL2-6/WTpooled | 0.97252 | 1 |
| IL7-5/WTpooled | 1.26567 | 0.722 |
| IL7-3/WTpooled | 1.1231 | 1 |
| IL12-4/WTpooled | 1.34046 | 0.532 |
| IL1-4/WTpooled | 0.96971 | 0.834 |
| WT/WTpooled | 1.37823 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
| hybridization | ratio | FDR (corrected p value) |
|---|
| 10 h post inoculation | 1.35848 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
| hybridization | ratio | FDR (corrected p value) |
|---|
| DC3000/delat hrp 0h | 1.0644 | 0.921 |
| DC3000/delta hrp 6h | 1.19885 | 1 |
| DC3000/delta hrp 12h | 0.97764 | 1 |
| DC3000/delta hrp 24h | 1.02674 | 0.604 |
Experiment: DC3000 effector mutants
| hybridization | ratio | FDR (corrected p value) |
|---|
| DC3000 delta A/DC3000 delta AB | 1.04943 | 0.29 |
| DC3000 delta B/DC3000 delta AB | 1.12167 | 0.261 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
| hybridization | ratio | FDR (corrected p value) |
|---|
| Exp 12h | 1.06234 | 1 |
| Exp 36h | 1.34351 | 0.326 |
| Exp 60h | 1.13665 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
| hybridization | ratio | FDR (corrected p value) |
|---|
| self-self | 1.00917 | 1 |
| Var 0h | 1.33272 | 0.936 |
| Var 12h I row2-row1 | 1.27444 | 0.348 |
| Var 12h NI row2-row1 | 0.80034 | 0.546 |
| Var 36h I row2-row1 | 1.06399 | 1 |
| Var 36h NI row2-row1 | 0.92962 | 0.469 |
| Var 60h I row2-row1 | 1.10965 | 0.562 |
| Var 60h NI row2-row1 | 1.09662 | 0.904 |
| Time course 0hI-0hNI | 1.04528 | 0.852 |
| Time course 12hI-12hNI | 0.98342 | 0.882 |
| Time course 36hI-36hNI | 0.94419 | 0.198 |
| Time course 60hI-60hNI | 1.22222 | 0.033 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
| hybridization | ratio | FDR (corrected p value) |
|---|
| transgenic ySAMdc/azygous control (mature green) | 1.35391 | 0.347 |
| transgenic ySAMdc/azygous control (breaker) | 0.66226 | 0.137 |
| transgenic ySAMdc/azygous control (red) | 0.73838 | 1 |
Experiment: Tomato root culture and Al treatment
| hybridization | ratio | FDR (corrected p value) |
|---|
| Al-treated/control | 1.01557 | 0.317 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
| hybridization | ratio | FDR (corrected p value) |
|---|
| salt-treated/no salt | 0.45091 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
| hybridization | ratio | FDR (corrected p value) |
|---|
| Manapal/WT (mature green) | 0.81517 | 0.172 |
| Manapal/WT (break) | 0.92604 | 1 |
| Manapal/WT (red) | 1.5419 | 0.413 |
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