Expression of 1-1-1.1.14.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.078750.827
27DAP/17DAP0.965880.967
39DAP/27DAP0.998080.84
41DAP/39DAP0.960540.833
42DAP/41DAP0.920431
43DAP/42DAP1.122580.892
47DAP/43DAP1.028330.95
52DAP/47DAP1.126850.934
57DAP/52DAP0.998370.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.047460.441
17DAP/reference0.9920.904
27DAP/reference1.011920.894
39DAP/reference1.020120.514
41DAP/reference1.183760.03
42DAP/reference1.08120.043
43DAP/reference0.985780.745
47DAP/reference1.057860.365
52DAP/reference1.059730.407
57DAP/reference0.927880.106

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.084380.205
27DAP/17DAP0.942490.508
39DAP/27DAP0.963760.469
41DAP/39DAP1.043320.735
42DAP/41DAP1.001920.929
43DAP/42DAP0.98570.709
47DAP/43DAP0.979510.87
52DAP/47DAP1.022790.939
57DAP/52DAP0.98770.804
57DAP/7DAP1.035111

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.024680.857
17DAP/reference1.299150.054
27DAP/reference1.114130.16
39DAP/reference1.247560.05
41DAP/reference1.119830.28
42DAP/reference1.125170.132
43DAP/reference1.297020.024
47DAP/reference1.172160.241
52DAP/reference1.156690.328
57DAP/reference1.151690.25

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.054580.319
17DAP/reference1.159010.009
27DAP/reference1.05730.516
39DAP/reference1.099430.309
41DAP/reference1.000920.631
42DAP/reference0.947560.237
43DAP/reference1.159990.157
47DAP/reference0.950760.232
52DAP/reference1.088680.027
57DAP/reference1.037150.423

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.045550.709
17DAP/reference1.074080.631
27DAP/reference1.610520.017
39DAP/reference1.33240.018
41DAP/reference1.342350.028
42DAP/reference1.341870.013
43DAP/reference1.253840.015
47DAP/reference1.309190.009
52DAP/reference1.1110.549
57DAP/reference1.046350.549

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.935990.997
26DAP/20DAP0.970470.512
34DAP/26DAP0.912130.539
51DAP/34DAP1.004340.988
52DAP/51DAP0.989091
53DAP/52DAP0.951080.741
55DAP/53DAP1.190720.415
57DAP/55DAP0.975720.783
62DAP/57DAP1.022750.935
68DAP/62DAP0.860910.505
68DAP/14DAP1.034540.826

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.077960.184

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.650080.159
Mature Green Tomato/Ripe Tomato1.44250.044
Immature Eggplant/Mature Eggplant0.470270.062
Ripe Pepper/Ripe Tomato1.332711
Mature Eggplant/Ripe Tomato0.584721

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.064640.742
1-1-2/M821.103781
12-2/M820.916920.955
12-4/M821.030961
1-3/M821.08431
2-1-1/M820.974231
2-1/M820.665780.74
2-6/M820.981961
3-2/M821.016561
4-1-1/M821.111781
4-1/M820.805950.737
4-3-2/M821.57970.508
4-3/M821.091961
5-3/M821.000771
6-2/M821.167981
6-3/M820.997081
7-1/M820.904220.803
7-2/M821.157770.385
9-3-2/M821.356621

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.029610.493
IL2-6/WTpooled0.811590.473
IL7-5/WTpooled1.087121
IL7-3/WTpooled1.179330.362
IL12-4/WTpooled1.11370.646
IL1-4/WTpooled0.901210.562
WT/WTpooled1.00571

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.012711

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.065530.774
DC3000/delta hrp 6h1.163030.343
DC3000/delta hrp 12h1.036781
DC3000/delta hrp 24h1.123720.202

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.131160.05
DC3000 delta B/DC3000 delta AB1.064140.433

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.871151
Exp 36h1.20380.943
Exp 60h0.632090.522

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.001321
Var 0h1.004071
Var 12h I row2-row11.070950.406
Var 12h NI row2-row11.016631
Var 36h I row2-row10.988831
Var 36h NI row2-row11.004171
Var 60h I row2-row11.290750.562
Var 60h NI row2-row11.060090.904
Time course 0hI-0hNI1.025880.852
Time course 12hI-12hNI0.976360.836
Time course 36hI-36hNI0.995950.753
Time course 60hI-60hNI0.850910.081

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.91320.33
transgenic ySAMdc/azygous control (breaker)1.956240.178
transgenic ySAMdc/azygous control (red)1.281070.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.018180.495

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.445260.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.627860.093
Manapal/WT (break)1.860110.183
Manapal/WT (red)2.0520.137