Expression of 1-1-1.1.14.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.049760.798
27DAP/17DAP1.221140.783
39DAP/27DAP0.798540.399
41DAP/39DAP1.290960.313
42DAP/41DAP1.022211
43DAP/42DAP1.141361
47DAP/43DAP1.042420.809
52DAP/47DAP1.11280.832
57DAP/52DAP0.938820.936

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.073440.421
17DAP/reference1.179950.089
27DAP/reference1.051330.759
39DAP/reference1.101550.224
41DAP/reference1.197390.058
42DAP/reference1.070710.103
43DAP/reference1.031951
47DAP/reference1.064940.105
52DAP/reference1.225030.02
57DAP/reference0.933510.131

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.972520.595
27DAP/17DAP1.015620.954
39DAP/27DAP1.026070.718
41DAP/39DAP1.032120.853
42DAP/41DAP0.981490.781
43DAP/42DAP1.073860.112
47DAP/43DAP0.968210.734
52DAP/47DAP1.065250.785
57DAP/52DAP1.01271
57DAP/7DAP1.068011

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.968630.445
17DAP/reference1.51460.013
27DAP/reference1.187550.03
39DAP/reference1.144990.09
41DAP/reference1.280230.045
42DAP/reference1.41830.007
43DAP/reference1.585650.018
47DAP/reference0.840430.128
52DAP/reference1.082330.781
57DAP/reference1.351960.026

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.118320.125
17DAP/reference1.181340.01
27DAP/reference1.261040.031
39DAP/reference1.126140.543
41DAP/reference1.083270.599
42DAP/reference0.999690.723
43DAP/reference1.179850.173
47DAP/reference1.020420.867
52DAP/reference1.262380.011
57DAP/reference1.248220.023

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.956530.098
17DAP/reference1.13540.612
27DAP/reference1.462990.021
39DAP/reference1.283140.037
41DAP/reference1.295340.02
42DAP/reference1.142690.382
43DAP/reference1.341430.109
47DAP/reference1.006430.708
52DAP/reference1.280770.132
57DAP/reference0.915850.283

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.959071
26DAP/20DAP0.950210.512
34DAP/26DAP1.000931
51DAP/34DAP0.947410.571
52DAP/51DAP1.005450.965
53DAP/52DAP0.965850.772
55DAP/53DAP1.10640.764
57DAP/55DAP1.027120.812
62DAP/57DAP0.900150.871
68DAP/62DAP0.925180.722
68DAP/14DAP0.858140.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.866190.034

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.320710.058
Mature Green Tomato/Ripe Tomato0.842630.411
Immature Eggplant/Mature Eggplant0.812630.134
Ripe Pepper/Ripe Tomato1.442941
Mature Eggplant/Ripe Tomato1.861560.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.99170.961
1-1-2/M820.899440.958
12-2/M821.03061
12-4/M820.915531
1-3/M821.0091
2-1-1/M820.978360.683
2-1/M820.932540.74
2-6/M821.112680.594
3-2/M820.979611
4-1-1/M820.852021
4-1/M820.795711
4-3-2/M820.963091
4-3/M821.081491
5-3/M821.006561
6-2/M821.15699
6-3/M820.9821
7-1/M820.956370.509
7-2/M821.067251
9-3-2/M820.860270.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.846890.243
IL2-6/WTpooled1.008151
IL7-5/WTpooled0.986751
IL7-3/WTpooled0.908030.418
IL12-4/WTpooled1.136310.646
IL1-4/WTpooled1.167251
WT/WTpooled0.933821

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.936610.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.046110.914
DC3000/delta hrp 6h1.018281
DC3000/delta hrp 12h1.074281
DC3000/delta hrp 24h1.157970.296

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.096280.229
DC3000 delta B/DC3000 delta AB1.109310.298

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.078071
Exp 36h0.975760.943
Exp 60h1.041971

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.973581
Var 0h0.95291
Var 12h I row2-row11.039840.736
Var 12h NI row2-row10.970720.906
Var 36h I row2-row10.949181
Var 36h NI row2-row11.039441
Var 60h I row2-row11.28360.562
Var 60h NI row2-row11.10060.904
Time course 0hI-0hNI1.063940.799
Time course 12hI-12hNI1.035230.788
Time course 36hI-36hNI0.936230.265
Time course 60hI-60hNI1.056090.216

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.180970.272
transgenic ySAMdc/azygous control (breaker)0.885390.49
transgenic ySAMdc/azygous control (red)1.110140.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.950430.12

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.970570.789

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.730560.172
Manapal/WT (break)1.167810.381
Manapal/WT (red)1.337970.413