Expression of 1-1-1.1.14.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.057590.851
27DAP/17DAP1.125110.859
39DAP/27DAP0.964310.7
41DAP/39DAP1.148140.488
42DAP/41DAP0.870791
43DAP/42DAP0.962640.895
47DAP/43DAP0.886690.618
52DAP/47DAP0.999980.982
57DAP/52DAP0.980080.971

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.102320.028
17DAP/reference1.014820.717
27DAP/reference0.998390.904
39DAP/reference1.034590.209
41DAP/reference1.101910.034
42DAP/reference1.121730.041
43DAP/reference0.993090.82
47DAP/reference1.052940.148
52DAP/reference1.078190.195
57DAP/reference1.02410.564

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.018040.841
27DAP/17DAP0.97890.748
39DAP/27DAP0.994531
41DAP/39DAP1.027110.79
42DAP/41DAP0.993050.884
43DAP/42DAP0.977780.466
47DAP/43DAP0.992260.954
52DAP/47DAP1.007330.986
57DAP/52DAP1.013570.963
57DAP/7DAP0.992591

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.069380.344
17DAP/reference1.020730.574
27DAP/reference1.029690.551
39DAP/reference1.063080.062
41DAP/reference1.133650.077
42DAP/reference1.179650.059
43DAP/reference1.132310.043
47DAP/reference1.118720.37
52DAP/reference1.196050.01
57DAP/reference1.163760.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.058430.495
17DAP/reference1.155760.045
27DAP/reference1.185490.23
39DAP/reference1.139830.16
41DAP/reference1.043571
42DAP/reference1.21410.061
43DAP/reference1.065610.553
47DAP/reference1.272090.008
52DAP/reference1.133710.061
57DAP/reference1.182540.104

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.171050.116
17DAP/reference1.06360.62
27DAP/reference0.986030.49
39DAP/reference1.078350.264
41DAP/reference1.141640.383
42DAP/reference1.20460.3
43DAP/reference1.217320.087
47DAP/reference1.152780.089
52DAP/reference1.082210.463
57DAP/reference1.385020.111

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.001251
26DAP/20DAP1.078420.642
34DAP/26DAP1.05830.819
51DAP/34DAP0.991350.917
52DAP/51DAP1.054180.616
53DAP/52DAP1.00572
55DAP/53DAP0.82840.225
57DAP/55DAP1.035520.947
62DAP/57DAP0.99751
68DAP/62DAP1.017070.939
68DAP/14DAP0.845281

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.966990.269

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.154080.068
Mature Green Tomato/Ripe Tomato0.718090.148
Immature Eggplant/Mature Eggplant1.016791
Ripe Pepper/Ripe Tomato1.66655
Mature Eggplant/Ripe Tomato1.297431

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.064730.877
1-1-2/M820.944891
12-2/M821.35822
12-4/M820.921460.619
1-3/M82N/AN/A
2-1-1/M821.115621
2-1/M821.47364
2-6/M820.982231
3-2/M821.04430.717
4-1-1/M820.8685
4-1/M821.010661
4-3-2/M820.855381
4-3/M820.787260.72
5-3/M821.034411
6-2/M820.99167
6-3/M821.013751
7-1/M821.248291
7-2/M820.922240.796
9-3-2/M820.816750.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.055641
IL2-6/WTpooled1.194980.788
IL7-5/WTpooled1.13128
IL7-3/WTpooled1.167681
IL12-4/WTpooled0.942771
IL1-4/WTpooled1.012871
WT/WTpooled1.157240.855

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.050110.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.098510.75
DC3000/delta hrp 6h0.988910.95
DC3000/delta hrp 12h1.022431
DC3000/delta hrp 24h0.950890.598

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.173230.042
DC3000 delta B/DC3000 delta AB1.105370.302

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.715491
Exp 36h0.89250.589
Exp 60h0.88330.29

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.013341
Var 0h0.905351
Var 12h I row2-row11.024110.736
Var 12h NI row2-row10.944320.713
Var 36h I row2-row10.840031
Var 36h NI row2-row10.933660.478
Var 60h I row2-row10.897760.285
Var 60h NI row2-row11.099210.904
Time course 0hI-0hNI1.028420.799
Time course 12hI-12hNI1.033140.611
Time course 36hI-36hNI1.19350.063
Time course 60hI-60hNI1.437050.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.367710.339
transgenic ySAMdc/azygous control (breaker)0.970021
transgenic ySAMdc/azygous control (red)0.906321

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.991820.712

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.267721

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.440310.086
Manapal/WT (break)0.873261
Manapal/WT (red)1.249070.413