Expression of 1-1-1.1.14.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05759 | 0.851 |
27DAP/17DAP | 1.12511 | 0.859 |
39DAP/27DAP | 0.96431 | 0.7 |
41DAP/39DAP | 1.14814 | 0.488 |
42DAP/41DAP | 0.87079 | 1 |
43DAP/42DAP | 0.96264 | 0.895 |
47DAP/43DAP | 0.88669 | 0.618 |
52DAP/47DAP | 0.99998 | 0.982 |
57DAP/52DAP | 0.98008 | 0.971 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10232 | 0.028 |
17DAP/reference | 1.01482 | 0.717 |
27DAP/reference | 0.99839 | 0.904 |
39DAP/reference | 1.03459 | 0.209 |
41DAP/reference | 1.10191 | 0.034 |
42DAP/reference | 1.12173 | 0.041 |
43DAP/reference | 0.99309 | 0.82 |
47DAP/reference | 1.05294 | 0.148 |
52DAP/reference | 1.07819 | 0.195 |
57DAP/reference | 1.0241 | 0.564 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01804 | 0.841 |
27DAP/17DAP | 0.9789 | 0.748 |
39DAP/27DAP | 0.99453 | 1 |
41DAP/39DAP | 1.02711 | 0.79 |
42DAP/41DAP | 0.99305 | 0.884 |
43DAP/42DAP | 0.97778 | 0.466 |
47DAP/43DAP | 0.99226 | 0.954 |
52DAP/47DAP | 1.00733 | 0.986 |
57DAP/52DAP | 1.01357 | 0.963 |
57DAP/7DAP | 0.99259 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06938 | 0.344 |
17DAP/reference | 1.02073 | 0.574 |
27DAP/reference | 1.02969 | 0.551 |
39DAP/reference | 1.06308 | 0.062 |
41DAP/reference | 1.13365 | 0.077 |
42DAP/reference | 1.17965 | 0.059 |
43DAP/reference | 1.13231 | 0.043 |
47DAP/reference | 1.11872 | 0.37 |
52DAP/reference | 1.19605 | 0.01 |
57DAP/reference | 1.16376 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05843 | 0.495 |
17DAP/reference | 1.15576 | 0.045 |
27DAP/reference | 1.18549 | 0.23 |
39DAP/reference | 1.13983 | 0.16 |
41DAP/reference | 1.04357 | 1 |
42DAP/reference | 1.2141 | 0.061 |
43DAP/reference | 1.06561 | 0.553 |
47DAP/reference | 1.27209 | 0.008 |
52DAP/reference | 1.13371 | 0.061 |
57DAP/reference | 1.18254 | 0.104 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17105 | 0.116 |
17DAP/reference | 1.0636 | 0.62 |
27DAP/reference | 0.98603 | 0.49 |
39DAP/reference | 1.07835 | 0.264 |
41DAP/reference | 1.14164 | 0.383 |
42DAP/reference | 1.2046 | 0.3 |
43DAP/reference | 1.21732 | 0.087 |
47DAP/reference | 1.15278 | 0.089 |
52DAP/reference | 1.08221 | 0.463 |
57DAP/reference | 1.38502 | 0.111 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00125 | 1 |
26DAP/20DAP | 1.07842 | 0.642 |
34DAP/26DAP | 1.0583 | 0.819 |
51DAP/34DAP | 0.99135 | 0.917 |
52DAP/51DAP | 1.05418 | 0.616 |
53DAP/52DAP | 1.00572 | |
55DAP/53DAP | 0.8284 | 0.225 |
57DAP/55DAP | 1.03552 | 0.947 |
62DAP/57DAP | 0.9975 | 1 |
68DAP/62DAP | 1.01707 | 0.939 |
68DAP/14DAP | 0.84528 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.96699 | 0.269 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.15408 | 0.068 |
Mature Green Tomato/Ripe Tomato | 0.71809 | 0.148 |
Immature Eggplant/Mature Eggplant | 1.01679 | 1 |
Ripe Pepper/Ripe Tomato | 1.66655 | |
Mature Eggplant/Ripe Tomato | 1.29743 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.06473 | 0.877 |
1-1-2/M82 | 0.94489 | 1 |
12-2/M82 | 1.35822 | |
12-4/M82 | 0.92146 | 0.619 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.11562 | 1 |
2-1/M82 | 1.47364 | |
2-6/M82 | 0.98223 | 1 |
3-2/M82 | 1.0443 | 0.717 |
4-1-1/M82 | 0.8685 | |
4-1/M82 | 1.01066 | 1 |
4-3-2/M82 | 0.85538 | 1 |
4-3/M82 | 0.78726 | 0.72 |
5-3/M82 | 1.03441 | 1 |
6-2/M82 | 0.99167 | |
6-3/M82 | 1.01375 | 1 |
7-1/M82 | 1.24829 | 1 |
7-2/M82 | 0.92224 | 0.796 |
9-3-2/M82 | 0.81675 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.05564 | 1 |
IL2-6/WTpooled | 1.19498 | 0.788 |
IL7-5/WTpooled | 1.13128 | |
IL7-3/WTpooled | 1.16768 | 1 |
IL12-4/WTpooled | 0.94277 | 1 |
IL1-4/WTpooled | 1.01287 | 1 |
WT/WTpooled | 1.15724 | 0.855 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.05011 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.09851 | 0.75 |
DC3000/delta hrp 6h | 0.98891 | 0.95 |
DC3000/delta hrp 12h | 1.02243 | 1 |
DC3000/delta hrp 24h | 0.95089 | 0.598 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.17323 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.10537 | 0.302 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.71549 | 1 |
Exp 36h | 0.8925 | 0.589 |
Exp 60h | 0.8833 | 0.29 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01334 | 1 |
Var 0h | 0.90535 | 1 |
Var 12h I row2-row1 | 1.02411 | 0.736 |
Var 12h NI row2-row1 | 0.94432 | 0.713 |
Var 36h I row2-row1 | 0.84003 | 1 |
Var 36h NI row2-row1 | 0.93366 | 0.478 |
Var 60h I row2-row1 | 0.89776 | 0.285 |
Var 60h NI row2-row1 | 1.09921 | 0.904 |
Time course 0hI-0hNI | 1.02842 | 0.799 |
Time course 12hI-12hNI | 1.03314 | 0.611 |
Time course 36hI-36hNI | 1.1935 | 0.063 |
Time course 60hI-60hNI | 1.43705 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.36771 | 0.339 |
transgenic ySAMdc/azygous control (breaker) | 0.97002 | 1 |
transgenic ySAMdc/azygous control (red) | 0.90632 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99182 | 0.712 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.26772 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.44031 | 0.086 |
Manapal/WT (break) | 0.87326 | 1 |
Manapal/WT (red) | 1.24907 | 0.413 |
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