Expression of 1-1-1.1.15.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.942150.61
27DAP/17DAP0.95660.952
39DAP/27DAP0.788510.352
41DAP/39DAP1.508370.193
42DAP/41DAP1.338360.691
43DAP/42DAP1.167840.894
47DAP/43DAP0.980910.825
52DAP/47DAP1.285210.61
57DAP/52DAP0.90290.803

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.85650.125
17DAP/reference0.992650.858
27DAP/reference0.964020.514
39DAP/reference0.97930.691
41DAP/reference0.95090.542
42DAP/reference0.96860.287
43DAP/reference1.067290.252
47DAP/reference0.889830.013
52DAP/reference0.905940.237
57DAP/reference0.891160.106

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.978380.716
27DAP/17DAP0.986880.919
39DAP/27DAP1.063440.553
41DAP/39DAP1.051531
42DAP/41DAP1.103280.727
43DAP/42DAP1.003281
47DAP/43DAP0.951630.734
52DAP/47DAP1.015480.986
57DAP/52DAP1.074080.8
57DAP/7DAP1.008271

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.944870.445
17DAP/reference0.820160.024
27DAP/reference0.774030.01
39DAP/reference0.890210.049
41DAP/reference0.864930.049
42DAP/reference0.81840.066
43DAP/reference0.724650.011
47DAP/reference0.794130.079
52DAP/reference0.786530.012
57DAP/reference0.823730.012

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.970450.639
17DAP/reference0.996910.747
27DAP/reference0.849440.097
39DAP/reference0.80780.055
41DAP/reference0.877950.068
42DAP/reference0.854910.055
43DAP/reference1.18210.417
47DAP/reference0.884430.034
52DAP/reference0.970880.38
57DAP/reference1.110420.353

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.821450.197
17DAP/reference0.992950.727
27DAP/reference0.954030.357
39DAP/reference0.786560.037
41DAP/reference0.891540.185
42DAP/reference0.68570.015
43DAP/reference0.7510.059
47DAP/reference0.97130.494
52DAP/reference0.733450.145
57DAP/reference0.608460.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.011351
26DAP/20DAP0.798030.317
34DAP/26DAP1.019951
51DAP/34DAP0.977220.807
52DAP/51DAP1.038230.689
53DAP/52DAP0.945160.732
55DAP/53DAP0.998610.908
57DAP/55DAP1.175120.682
62DAP/57DAP1.273040.133
68DAP/62DAP0.907420.641
68DAP/14DAP0.797470.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.796250.062

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.827410.148
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato0.60757

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.868470.944
1-1-2/M820.81361
12-2/M821.079121
12-4/M821.013511
1-3/M820.70150.376
2-1-1/M821.032951
2-1/M82N/AN/A
2-6/M821.216350.594
3-2/M820.73044
4-1-1/M821.188231
4-1/M821.23637
4-3-2/M821.17357
4-3/M820.661490.72
5-3/M820.882560.642
6-2/M820.970811
6-3/M821.214181
7-1/M821.35241
7-2/M820.901630.881
9-3-2/M820.96525

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.554010.277
IL2-6/WTpooled0.677390.348
IL7-5/WTpooled1.20578
IL7-3/WTpooled0.747770.418
IL12-4/WTpooled0.859740.71
IL1-4/WTpooled1.155751
WT/WTpooled1.036141

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.88370.226

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.020191
DC3000/delta hrp 6h0.44042
DC3000/delta hrp 12h1.36071
DC3000/delta hrp 24h1.118790.411

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.00631
DC3000 delta B/DC3000 delta AB0.881090.393

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h1.330590.162

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.002291
Var 0h0.684760.933
Var 12h I row2-row11.151440.204
Var 12h NI row2-row10.895880.494
Var 36h I row2-row10.841370.438
Var 36h NI row2-row10.883450.478
Var 60h I row2-row11.472370.562
Var 60h NI row2-row11.350740.904
Time course 0hI-0hNI1.102520.799
Time course 12hI-12hNI1.031890.82
Time course 36hI-36hNI0.957120.306
Time course 60hI-60hNI1.216250.06

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.989710.862
transgenic ySAMdc/azygous control (breaker)1.06611
transgenic ySAMdc/azygous control (red)0.934881

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.032010.115

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.266110.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.730240.172
Manapal/WT (break)0.829731
Manapal/WT (red)0.829230.315