Expression of 1-1-1.1.15.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94215 | 0.61 |
27DAP/17DAP | 0.9566 | 0.952 |
39DAP/27DAP | 0.78851 | 0.352 |
41DAP/39DAP | 1.50837 | 0.193 |
42DAP/41DAP | 1.33836 | 0.691 |
43DAP/42DAP | 1.16784 | 0.894 |
47DAP/43DAP | 0.98091 | 0.825 |
52DAP/47DAP | 1.28521 | 0.61 |
57DAP/52DAP | 0.9029 | 0.803 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8565 | 0.125 |
17DAP/reference | 0.99265 | 0.858 |
27DAP/reference | 0.96402 | 0.514 |
39DAP/reference | 0.9793 | 0.691 |
41DAP/reference | 0.9509 | 0.542 |
42DAP/reference | 0.9686 | 0.287 |
43DAP/reference | 1.06729 | 0.252 |
47DAP/reference | 0.88983 | 0.013 |
52DAP/reference | 0.90594 | 0.237 |
57DAP/reference | 0.89116 | 0.106 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97838 | 0.716 |
27DAP/17DAP | 0.98688 | 0.919 |
39DAP/27DAP | 1.06344 | 0.553 |
41DAP/39DAP | 1.05153 | 1 |
42DAP/41DAP | 1.10328 | 0.727 |
43DAP/42DAP | 1.00328 | 1 |
47DAP/43DAP | 0.95163 | 0.734 |
52DAP/47DAP | 1.01548 | 0.986 |
57DAP/52DAP | 1.07408 | 0.8 |
57DAP/7DAP | 1.00827 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94487 | 0.445 |
17DAP/reference | 0.82016 | 0.024 |
27DAP/reference | 0.77403 | 0.01 |
39DAP/reference | 0.89021 | 0.049 |
41DAP/reference | 0.86493 | 0.049 |
42DAP/reference | 0.8184 | 0.066 |
43DAP/reference | 0.72465 | 0.011 |
47DAP/reference | 0.79413 | 0.079 |
52DAP/reference | 0.78653 | 0.012 |
57DAP/reference | 0.82373 | 0.012 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97045 | 0.639 |
17DAP/reference | 0.99691 | 0.747 |
27DAP/reference | 0.84944 | 0.097 |
39DAP/reference | 0.8078 | 0.055 |
41DAP/reference | 0.87795 | 0.068 |
42DAP/reference | 0.85491 | 0.055 |
43DAP/reference | 1.1821 | 0.417 |
47DAP/reference | 0.88443 | 0.034 |
52DAP/reference | 0.97088 | 0.38 |
57DAP/reference | 1.11042 | 0.353 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82145 | 0.197 |
17DAP/reference | 0.99295 | 0.727 |
27DAP/reference | 0.95403 | 0.357 |
39DAP/reference | 0.78656 | 0.037 |
41DAP/reference | 0.89154 | 0.185 |
42DAP/reference | 0.6857 | 0.015 |
43DAP/reference | 0.751 | 0.059 |
47DAP/reference | 0.9713 | 0.494 |
52DAP/reference | 0.73345 | 0.145 |
57DAP/reference | 0.60846 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01135 | 1 |
26DAP/20DAP | 0.79803 | 0.317 |
34DAP/26DAP | 1.01995 | 1 |
51DAP/34DAP | 0.97722 | 0.807 |
52DAP/51DAP | 1.03823 | 0.689 |
53DAP/52DAP | 0.94516 | 0.732 |
55DAP/53DAP | 0.99861 | 0.908 |
57DAP/55DAP | 1.17512 | 0.682 |
62DAP/57DAP | 1.27304 | 0.133 |
68DAP/62DAP | 0.90742 | 0.641 |
68DAP/14DAP | 0.79747 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.79625 | 0.062 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.82741 | 0.148 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 0.60757 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.86847 | 0.944 |
1-1-2/M82 | 0.8136 | 1 |
12-2/M82 | 1.07912 | 1 |
12-4/M82 | 1.01351 | 1 |
1-3/M82 | 0.7015 | 0.376 |
2-1-1/M82 | 1.03295 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.21635 | 0.594 |
3-2/M82 | 0.73044 | |
4-1-1/M82 | 1.18823 | 1 |
4-1/M82 | 1.23637 | |
4-3-2/M82 | 1.17357 | |
4-3/M82 | 0.66149 | 0.72 |
5-3/M82 | 0.88256 | 0.642 |
6-2/M82 | 0.97081 | 1 |
6-3/M82 | 1.21418 | 1 |
7-1/M82 | 1.35241 | |
7-2/M82 | 0.90163 | 0.881 |
9-3-2/M82 | 0.96525 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.55401 | 0.277 |
IL2-6/WTpooled | 0.67739 | 0.348 |
IL7-5/WTpooled | 1.20578 | |
IL7-3/WTpooled | 0.74777 | 0.418 |
IL12-4/WTpooled | 0.85974 | 0.71 |
IL1-4/WTpooled | 1.15575 | 1 |
WT/WTpooled | 1.03614 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.8837 | 0.226 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02019 | 1 |
DC3000/delta hrp 6h | 0.44042 | |
DC3000/delta hrp 12h | 1.3607 | 1 |
DC3000/delta hrp 24h | 1.11879 | 0.411 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.0063 | 1 |
DC3000 delta B/DC3000 delta AB | 0.88109 | 0.393 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 1.33059 | 0.162 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00229 | 1 |
Var 0h | 0.68476 | 0.933 |
Var 12h I row2-row1 | 1.15144 | 0.204 |
Var 12h NI row2-row1 | 0.89588 | 0.494 |
Var 36h I row2-row1 | 0.84137 | 0.438 |
Var 36h NI row2-row1 | 0.88345 | 0.478 |
Var 60h I row2-row1 | 1.47237 | 0.562 |
Var 60h NI row2-row1 | 1.35074 | 0.904 |
Time course 0hI-0hNI | 1.10252 | 0.799 |
Time course 12hI-12hNI | 1.03189 | 0.82 |
Time course 36hI-36hNI | 0.95712 | 0.306 |
Time course 60hI-60hNI | 1.21625 | 0.06 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98971 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 1.0661 | 1 |
transgenic ySAMdc/azygous control (red) | 0.93488 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03201 | 0.115 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.26611 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.73024 | 0.172 |
Manapal/WT (break) | 0.82973 | 1 |
Manapal/WT (red) | 0.82923 | 0.315 |
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