Expression of 1-1-1.1.17.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07117 | 0.812 |
27DAP/17DAP | 1.32331 | 0.741 |
39DAP/27DAP | 1.15407 | 0.603 |
41DAP/39DAP | 1.32225 | 0.22 |
42DAP/41DAP | 1.18227 | 0.802 |
43DAP/42DAP | 0.89886 | 0.751 |
47DAP/43DAP | 0.87569 | 0.591 |
52DAP/47DAP | 1.62185 | 0.403 |
57DAP/52DAP | 0.95449 | 0.949 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97546 | 0.476 |
17DAP/reference | 0.9534 | 0.24 |
27DAP/reference | 0.92257 | 0.406 |
39DAP/reference | 0.93915 | 0.254 |
41DAP/reference | 1.03338 | 0.759 |
42DAP/reference | 0.96696 | 0.287 |
43DAP/reference | 1.03173 | 0.617 |
47DAP/reference | 0.93033 | 0.127 |
52DAP/reference | 0.82982 | 0.162 |
57DAP/reference | 0.79307 | 0.023 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01017 | 1 |
27DAP/17DAP | 0.9824 | 0.887 |
39DAP/27DAP | 1.0736 | 0.505 |
41DAP/39DAP | 1.00668 | 1 |
42DAP/41DAP | 1.02998 | 0.935 |
43DAP/42DAP | 1.11424 | 0.273 |
47DAP/43DAP | 0.95293 | 0.774 |
52DAP/47DAP | 0.99857 | 0.959 |
57DAP/52DAP | 0.99422 | 0.848 |
57DAP/7DAP | 1.00929 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76398 | 0.088 |
17DAP/reference | 0.77846 | 0.013 |
27DAP/reference | 0.83997 | 0.011 |
39DAP/reference | 0.87598 | 0.126 |
41DAP/reference | 0.8377 | 0.09 |
42DAP/reference | 0.8507 | 0.048 |
43DAP/reference | 0.80321 | 0.014 |
47DAP/reference | 0.97521 | 0.671 |
52DAP/reference | 0.72413 | 0.02 |
57DAP/reference | 0.72444 | 0.008 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11715 | 0.304 |
17DAP/reference | 1.09489 | 0.229 |
27DAP/reference | 0.83984 | 0.108 |
39DAP/reference | 0.94154 | 0.265 |
41DAP/reference | 0.99597 | 0.615 |
42DAP/reference | 1.06144 | 0.73 |
43DAP/reference | 1.06841 | 0.949 |
47DAP/reference | 1.07117 | 0.454 |
52DAP/reference | 1.04145 | 0.528 |
57DAP/reference | 1.25259 | 0.2 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81822 | 0.034 |
17DAP/reference | 1.21482 | 0.365 |
27DAP/reference | 0.74014 | 0.063 |
39DAP/reference | 0.72934 | 0.033 |
41DAP/reference | 1.37552 | 0.889 |
42DAP/reference | 0.85701 | 0.071 |
43DAP/reference | 0.85148 | 0.125 |
47DAP/reference | 1.22215 | 0.133 |
52DAP/reference | 0.85275 | 0.319 |
57DAP/reference | 0.88301 | 0.278 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.16312 | 0.966 |
26DAP/20DAP | 0.97149 | 1 |
34DAP/26DAP | 0.92346 | 0.826 |
51DAP/34DAP | 0.97216 | 0.703 |
52DAP/51DAP | 1.15063 | 0.154 |
53DAP/52DAP | 0.9935 | 0.97 |
55DAP/53DAP | 1.04732 | 0.848 |
57DAP/55DAP | 1.05765 | 0.935 |
62DAP/57DAP | 1.16169 | 0.723 |
68DAP/62DAP | 1.10986 | 1 |
68DAP/14DAP | 0.94427 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.85257 | 0.097 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.45256 | 0.094 |
Mature Green Tomato/Ripe Tomato | 0.81372 | 0.182 |
Immature Eggplant/Mature Eggplant | 1.11281 | 0.507 |
Ripe Pepper/Ripe Tomato | 1.48419 | 0.258 |
Mature Eggplant/Ripe Tomato | 0.57995 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.95718 | 0.944 |
1-1-2/M82 | 0.94735 | 1 |
12-2/M82 | 1.05557 | 1 |
12-4/M82 | 0.98229 | 1 |
1-3/M82 | 0.91947 | 0.501 |
2-1-1/M82 | 1.06971 | 0.689 |
2-1/M82 | 1.33907 | 1 |
2-6/M82 | 1.08114 | 1 |
3-2/M82 | 0.9716 | 0.414 |
4-1-1/M82 | 1.14664 | 1 |
4-1/M82 | 1.18668 | 1 |
4-3-2/M82 | 0.88156 | |
4-3/M82 | 1.05993 | 1 |
5-3/M82 | 0.94302 | 0.642 |
6-2/M82 | 0.90392 | 1 |
6-3/M82 | 1.02732 | 1 |
7-1/M82 | 0.95691 | 1 |
7-2/M82 | 0.92859 | 0.796 |
9-3-2/M82 | 0.92114 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.88074 | 0.243 |
IL2-6/WTpooled | 0.9788 | 1 |
IL7-5/WTpooled | 0.87204 | 1 |
IL7-3/WTpooled | 0.93556 | 0.31 |
IL12-4/WTpooled | 0.75767 | 0.478 |
IL1-4/WTpooled | 1.03274 | 1 |
WT/WTpooled | 0.98154 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.03863 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05812 | 0.894 |
DC3000/delta hrp 6h | 1.00362 | 0.95 |
DC3000/delta hrp 12h | 1.23039 | 1 |
DC3000/delta hrp 24h | 1.68041 | 0.411 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.09278 | 0.515 |
DC3000 delta B/DC3000 delta AB | 0.96517 | 0.766 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.86633 | 0.265 |
Exp 36h | 0.9585 | 0.943 |
Exp 60h | 0.91701 | 0.664 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98592 | 1 |
Var 0h | 1.0472 | 1 |
Var 12h I row2-row1 | 1.3034 | 0.283 |
Var 12h NI row2-row1 | 0.93058 | 0.713 |
Var 36h I row2-row1 | 0.87331 | 0.575 |
Var 36h NI row2-row1 | 0.93434 | 0.706 |
Var 60h I row2-row1 | 1.10385 | 0.543 |
Var 60h NI row2-row1 | 1.17129 | 0.904 |
Time course 0hI-0hNI | 1.08751 | 0.662 |
Time course 12hI-12hNI | 0.95958 | 0.711 |
Time course 36hI-36hNI | 0.88366 | 0.052 |
Time course 60hI-60hNI | 0.86921 | 0.161 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.95779 | 0.567 |
transgenic ySAMdc/azygous control (breaker) | 0.779 | 0.15 |
transgenic ySAMdc/azygous control (red) | 1.04055 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.92143 | 0.308 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.19799 | 0.14 |
Manapal/WT (break) | 1.03175 | 1 |
Manapal/WT (red) | 0.91918 | 0.36 |
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