Expression of 1-1-1.1.17.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.071170.812
27DAP/17DAP1.323310.741
39DAP/27DAP1.154070.603
41DAP/39DAP1.322250.22
42DAP/41DAP1.182270.802
43DAP/42DAP0.898860.751
47DAP/43DAP0.875690.591
52DAP/47DAP1.621850.403
57DAP/52DAP0.954490.949

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.975460.476
17DAP/reference0.95340.24
27DAP/reference0.922570.406
39DAP/reference0.939150.254
41DAP/reference1.033380.759
42DAP/reference0.966960.287
43DAP/reference1.031730.617
47DAP/reference0.930330.127
52DAP/reference0.829820.162
57DAP/reference0.793070.023

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.010171
27DAP/17DAP0.98240.887
39DAP/27DAP1.07360.505
41DAP/39DAP1.006681
42DAP/41DAP1.029980.935
43DAP/42DAP1.114240.273
47DAP/43DAP0.952930.774
52DAP/47DAP0.998570.959
57DAP/52DAP0.994220.848
57DAP/7DAP1.00929

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.763980.088
17DAP/reference0.778460.013
27DAP/reference0.839970.011
39DAP/reference0.875980.126
41DAP/reference0.83770.09
42DAP/reference0.85070.048
43DAP/reference0.803210.014
47DAP/reference0.975210.671
52DAP/reference0.724130.02
57DAP/reference0.724440.008

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.117150.304
17DAP/reference1.094890.229
27DAP/reference0.839840.108
39DAP/reference0.941540.265
41DAP/reference0.995970.615
42DAP/reference1.061440.73
43DAP/reference1.068410.949
47DAP/reference1.071170.454
52DAP/reference1.041450.528
57DAP/reference1.252590.2

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.818220.034
17DAP/reference1.214820.365
27DAP/reference0.740140.063
39DAP/reference0.729340.033
41DAP/reference1.375520.889
42DAP/reference0.857010.071
43DAP/reference0.851480.125
47DAP/reference1.222150.133
52DAP/reference0.852750.319
57DAP/reference0.883010.278

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.163120.966
26DAP/20DAP0.971491
34DAP/26DAP0.923460.826
51DAP/34DAP0.972160.703
52DAP/51DAP1.150630.154
53DAP/52DAP0.99350.97
55DAP/53DAP1.047320.848
57DAP/55DAP1.057650.935
62DAP/57DAP1.161690.723
68DAP/62DAP1.109861
68DAP/14DAP0.944271

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.852570.097

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.452560.094
Mature Green Tomato/Ripe Tomato0.813720.182
Immature Eggplant/Mature Eggplant1.112810.507
Ripe Pepper/Ripe Tomato1.484190.258
Mature Eggplant/Ripe Tomato0.579950.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.957180.944
1-1-2/M820.947351
12-2/M821.055571
12-4/M820.982291
1-3/M820.919470.501
2-1-1/M821.069710.689
2-1/M821.339071
2-6/M821.081141
3-2/M820.97160.414
4-1-1/M821.146641
4-1/M821.186681
4-3-2/M820.88156
4-3/M821.059931
5-3/M820.943020.642
6-2/M820.903921
6-3/M821.027321
7-1/M820.956911
7-2/M820.928590.796
9-3-2/M820.921141

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.880740.243
IL2-6/WTpooled0.97881
IL7-5/WTpooled0.872041
IL7-3/WTpooled0.935560.31
IL12-4/WTpooled0.757670.478
IL1-4/WTpooled1.032741
WT/WTpooled0.981541

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.038631

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.058120.894
DC3000/delta hrp 6h1.003620.95
DC3000/delta hrp 12h1.230391
DC3000/delta hrp 24h1.680410.411

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.092780.515
DC3000 delta B/DC3000 delta AB0.965170.766

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.866330.265
Exp 36h0.95850.943
Exp 60h0.917010.664

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.985921
Var 0h1.04721
Var 12h I row2-row11.30340.283
Var 12h NI row2-row10.930580.713
Var 36h I row2-row10.873310.575
Var 36h NI row2-row10.934340.706
Var 60h I row2-row11.103850.543
Var 60h NI row2-row11.171290.904
Time course 0hI-0hNI1.087510.662
Time course 12hI-12hNI0.959580.711
Time course 36hI-36hNI0.883660.052
Time course 60hI-60hNI0.869210.161

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.957790.567
transgenic ySAMdc/azygous control (breaker)0.7790.15
transgenic ySAMdc/azygous control (red)1.040551

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.921430.308

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.197990.14
Manapal/WT (break)1.031751
Manapal/WT (red)0.919180.36