Expression of 1-1-1.1.17.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.071470.975
27DAP/17DAP0.886120.73
39DAP/27DAP1.005821
41DAP/39DAP0.785890.387
42DAP/41DAP1.208380.856
43DAP/42DAP1.359920.313
47DAP/43DAP1.012240.92
52DAP/47DAP0.882110.677
57DAP/52DAP1.133791

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.224150.278
17DAP/reference0.881060.536
27DAP/reference0.973710.763
39DAP/reference1.23070.393
41DAP/reference1.063970.516
42DAP/reference1.008240.645
43DAP/reference1.00650.924
47DAP/reference1.279280.015
52DAP/reference1.03330.951
57DAP/reference0.904360.056

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.433430.036
27DAP/17DAP0.92440.684
39DAP/27DAP0.596990.032
41DAP/39DAP1.098530.748
42DAP/41DAP0.994220.83
43DAP/42DAP0.832350.116
47DAP/43DAP0.997270.947
52DAP/47DAP1.070920.826
57DAP/52DAP1.215450.686
57DAP/7DAP1.032521

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.442080.031
17DAP/reference0.98970.599
27DAP/reference0.937360.325
39DAP/reference0.693350.011
41DAP/reference0.616320.012
42DAP/reference0.719830.09
43DAP/reference0.932520.279
47DAP/reference1.011511
52DAP/reference0.77410.02
57DAP/reference0.960990.353

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.84670.182
17DAP/reference0.871730.326
27DAP/reference0.911050.212
39DAP/reference1.00760.642
41DAP/reference1.004820.702
42DAP/reference0.955540.321
43DAP/reference1.190580.91
47DAP/reference1.190150.153
52DAP/reference1.008690.761
57DAP/reference1.132850.581

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.579320.28
17DAP/reference1.107520.814
27DAP/reference1.335240.034
39DAP/reference1.298930.029
41DAP/reference1.050960.777
42DAP/reference1.066640.716
43DAP/reference1.157380.275
47DAP/reference0.824870.12
52DAP/reference1.220920.262
57DAP/reference1.073330.909

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.91859
26DAP/20DAP1.144290.598
34DAP/26DAP1.164910.819
51DAP/34DAP1.337060.066
52DAP/51DAP1.035950.836
53DAP/52DAP0.744650.06
55DAP/53DAP0.564150.019
57DAP/55DAP0.903690.629
62DAP/57DAP1.006811
68DAP/62DAP1.163310.899
68DAP/14DAP1.178221

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.286640.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato4.099260.015
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato7.09718
Mature Eggplant/Ripe Tomato4.776490.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.96941
12-2/M82N/AN/A
12-4/M820.774661
1-3/M82N/AN/A
2-1-1/M820.41227
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.77757
5-3/M820.673831
6-2/M82N/AN/A
6-3/M820.84912
7-1/M820.72007
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.059940.46
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.777870.31
IL12-4/WTpooled0.919790.71
IL1-4/WTpooled1.126371
WT/WTpooled1.086531

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.833390.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.957941
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.260021
DC3000/delta hrp 24h0.50380.034

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.666530.024
DC3000 delta B/DC3000 delta AB0.622390.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.986091
Var 0h1.245370.936
Var 12h I row2-row10.773360.338
Var 12h NI row2-row11.068761
Var 36h I row2-row11.05120.908
Var 36h NI row2-row11.375840.482
Var 60h I row2-row10.881020.582
Var 60h NI row2-row11.211710.904
Time course 0hI-0hNI0.943780.615
Time course 12hI-12hNI1.004561
Time course 36hI-36hNI0.891270.097
Time course 60hI-60hNI0.186510.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.227551

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.415070.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)4.882240.134