Expression of 1-1-1.1.17.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07147 | 0.975 |
27DAP/17DAP | 0.88612 | 0.73 |
39DAP/27DAP | 1.00582 | 1 |
41DAP/39DAP | 0.78589 | 0.387 |
42DAP/41DAP | 1.20838 | 0.856 |
43DAP/42DAP | 1.35992 | 0.313 |
47DAP/43DAP | 1.01224 | 0.92 |
52DAP/47DAP | 0.88211 | 0.677 |
57DAP/52DAP | 1.13379 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22415 | 0.278 |
17DAP/reference | 0.88106 | 0.536 |
27DAP/reference | 0.97371 | 0.763 |
39DAP/reference | 1.2307 | 0.393 |
41DAP/reference | 1.06397 | 0.516 |
42DAP/reference | 1.00824 | 0.645 |
43DAP/reference | 1.0065 | 0.924 |
47DAP/reference | 1.27928 | 0.015 |
52DAP/reference | 1.0333 | 0.951 |
57DAP/reference | 0.90436 | 0.056 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.43343 | 0.036 |
27DAP/17DAP | 0.9244 | 0.684 |
39DAP/27DAP | 0.59699 | 0.032 |
41DAP/39DAP | 1.09853 | 0.748 |
42DAP/41DAP | 0.99422 | 0.83 |
43DAP/42DAP | 0.83235 | 0.116 |
47DAP/43DAP | 0.99727 | 0.947 |
52DAP/47DAP | 1.07092 | 0.826 |
57DAP/52DAP | 1.21545 | 0.686 |
57DAP/7DAP | 1.03252 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.44208 | 0.031 |
17DAP/reference | 0.9897 | 0.599 |
27DAP/reference | 0.93736 | 0.325 |
39DAP/reference | 0.69335 | 0.011 |
41DAP/reference | 0.61632 | 0.012 |
42DAP/reference | 0.71983 | 0.09 |
43DAP/reference | 0.93252 | 0.279 |
47DAP/reference | 1.01151 | 1 |
52DAP/reference | 0.7741 | 0.02 |
57DAP/reference | 0.96099 | 0.353 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8467 | 0.182 |
17DAP/reference | 0.87173 | 0.326 |
27DAP/reference | 0.91105 | 0.212 |
39DAP/reference | 1.0076 | 0.642 |
41DAP/reference | 1.00482 | 0.702 |
42DAP/reference | 0.95554 | 0.321 |
43DAP/reference | 1.19058 | 0.91 |
47DAP/reference | 1.19015 | 0.153 |
52DAP/reference | 1.00869 | 0.761 |
57DAP/reference | 1.13285 | 0.581 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.57932 | 0.28 |
17DAP/reference | 1.10752 | 0.814 |
27DAP/reference | 1.33524 | 0.034 |
39DAP/reference | 1.29893 | 0.029 |
41DAP/reference | 1.05096 | 0.777 |
42DAP/reference | 1.06664 | 0.716 |
43DAP/reference | 1.15738 | 0.275 |
47DAP/reference | 0.82487 | 0.12 |
52DAP/reference | 1.22092 | 0.262 |
57DAP/reference | 1.07333 | 0.909 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.91859 | |
26DAP/20DAP | 1.14429 | 0.598 |
34DAP/26DAP | 1.16491 | 0.819 |
51DAP/34DAP | 1.33706 | 0.066 |
52DAP/51DAP | 1.03595 | 0.836 |
53DAP/52DAP | 0.74465 | 0.06 |
55DAP/53DAP | 0.56415 | 0.019 |
57DAP/55DAP | 0.90369 | 0.629 |
62DAP/57DAP | 1.00681 | 1 |
68DAP/62DAP | 1.16331 | 0.899 |
68DAP/14DAP | 1.17822 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.28664 | 0.019 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 4.09926 | 0.015 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 7.09718 | |
Mature Eggplant/Ripe Tomato | 4.77649 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.9694 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.77466 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.41227 | |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.77757 | |
5-3/M82 | 0.67383 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.84912 | |
7-1/M82 | 0.72007 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.05994 | 0.46 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.77787 | 0.31 |
IL12-4/WTpooled | 0.91979 | 0.71 |
IL1-4/WTpooled | 1.12637 | 1 |
WT/WTpooled | 1.08653 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.83339 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95794 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.26002 | 1 |
DC3000/delta hrp 24h | 0.5038 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.66653 | 0.024 |
DC3000 delta B/DC3000 delta AB | 0.62239 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98609 | 1 |
Var 0h | 1.24537 | 0.936 |
Var 12h I row2-row1 | 0.77336 | 0.338 |
Var 12h NI row2-row1 | 1.06876 | 1 |
Var 36h I row2-row1 | 1.0512 | 0.908 |
Var 36h NI row2-row1 | 1.37584 | 0.482 |
Var 60h I row2-row1 | 0.88102 | 0.582 |
Var 60h NI row2-row1 | 1.21171 | 0.904 |
Time course 0hI-0hNI | 0.94378 | 0.615 |
Time course 12hI-12hNI | 1.00456 | 1 |
Time course 36hI-36hNI | 0.89127 | 0.097 |
Time course 60hI-60hNI | 0.18651 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | 0.22755 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.41507 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 4.88224 | 0.134 |
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