Expression of 1-1-1.1.17.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.78186 | 0.297 |
27DAP/17DAP | 1.07022 | 1 |
39DAP/27DAP | 2.143 | 0.045 |
41DAP/39DAP | 1.07652 | 0.822 |
42DAP/41DAP | 1.38046 | 0.366 |
43DAP/42DAP | 0.98003 | 0.89 |
47DAP/43DAP | 1.17287 | 0.727 |
52DAP/47DAP | 0.65151 | 0.172 |
57DAP/52DAP | 1.14774 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.24734 | 0.994 |
17DAP/reference | 0.98927 | 0.858 |
27DAP/reference | 1.12232 | 0.66 |
39DAP/reference | 0.84591 | 0.064 |
41DAP/reference | 0.85988 | 0.267 |
42DAP/reference | 1.03498 | 1 |
43DAP/reference | 1.12563 | 0.471 |
47DAP/reference | 1.18883 | 0.148 |
52DAP/reference | 1.42764 | 0.092 |
57DAP/reference | 1.28412 | 0.073 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.77994 | 0.323 |
27DAP/17DAP | 1.11953 | 0.887 |
39DAP/27DAP | 1.42582 | 0.27 |
41DAP/39DAP | 1.55715 | 0.407 |
42DAP/41DAP | 0.99668 | 0.777 |
43DAP/42DAP | 1.06734 | 0.413 |
47DAP/43DAP | 1.16288 | 0.552 |
52DAP/47DAP | 0.88016 | 0.466 |
57DAP/52DAP | 1.00685 | 0.862 |
57DAP/7DAP | 1.00865 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.2782 | 0.039 |
17DAP/reference | 0.74415 | 0.013 |
27DAP/reference | 0.86553 | 0.013 |
39DAP/reference | 0.69437 | 0.013 |
41DAP/reference | 0.71361 | 0.033 |
42DAP/reference | 0.8134 | 0.032 |
43DAP/reference | 0.74112 | 0.04 |
47DAP/reference | 0.72298 | 0.101 |
52DAP/reference | 0.73679 | 0.015 |
57DAP/reference | 0.61283 | 0.008 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.17079 | 0.885 |
17DAP/reference | 0.69318 | 0.008 |
27DAP/reference | 0.91774 | 0.407 |
39DAP/reference | 1.10813 | 1 |
41DAP/reference | 1.16999 | 0.513 |
42DAP/reference | 1.05654 | 0.723 |
43DAP/reference | 0.77725 | 0.033 |
47DAP/reference | 1.04531 | 0.795 |
52DAP/reference | 1.15141 | 0.789 |
57DAP/reference | 0.91923 | 0.433 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.38962 | 0.016 |
17DAP/reference | 0.78818 | 0.221 |
27DAP/reference | 0.66047 | 0.044 |
39DAP/reference | 0.92114 | 0.147 |
41DAP/reference | 0.81963 | 0.046 |
42DAP/reference | 0.98262 | 0.671 |
43DAP/reference | 1.01148 | 1 |
47DAP/reference | 0.91905 | 0.259 |
52DAP/reference | 0.87465 | 0.327 |
57DAP/reference | 0.92968 | 0.43 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.87111 | 1 |
26DAP/20DAP | 1.50425 | |
34DAP/26DAP | 0.7316 | 0.404 |
51DAP/34DAP | 1.72806 | |
52DAP/51DAP | 1.1304 | 0.733 |
53DAP/52DAP | 2.01853 | 0.221 |
55DAP/53DAP | 1.04074 | 0.864 |
57DAP/55DAP | 0.96972 | 0.825 |
62DAP/57DAP | 0.96539 | 0.994 |
68DAP/62DAP | 1.33464 | 0.464 |
68DAP/14DAP | 0.80761 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.3293 | 0.047 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.60002 | 0.256 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 2.12455 | 1 |
Mature Eggplant/Ripe Tomato | 0.25172 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.02801 | 0.742 |
1-1-2/M82 | 1.15054 | 1 |
12-2/M82 | 0.67813 | |
12-4/M82 | 1.16486 | 1 |
1-3/M82 | 1.88629 | |
2-1-1/M82 | 1.13589 | |
2-1/M82 | 0.92306 | |
2-6/M82 | 1.94169 | 0.345 |
3-2/M82 | 1.03527 | |
4-1-1/M82 | 1.84742 | 0.963 |
4-1/M82 | 1.27068 | 1 |
4-3-2/M82 | 1.15443 | |
4-3/M82 | 1.03155 | 1 |
5-3/M82 | 0.92163 | 0.419 |
6-2/M82 | 1.33947 | |
6-3/M82 | 0.36429 | |
7-1/M82 | 1.01823 | |
7-2/M82 | 1.6362 | 0.282 |
9-3-2/M82 | 2.50647 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.94942 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.945 | 1 |
IL12-4/WTpooled | 1.27054 | 0.516 |
IL1-4/WTpooled | 0.85808 | 0.435 |
WT/WTpooled | 1.0698 | 0.89 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.57752 | 0.309 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05812 | 0.921 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.10231 | |
DC3000/delta hrp 24h | 3.18791 | 0.022 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.27164 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 1.53025 | 0.237 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.81974 | 1 |
Var 0h | 1.26349 | 0.289 |
Var 12h I row2-row1 | 1.13574 | 0.473 |
Var 12h NI row2-row1 | 2.30634 | 1 |
Var 36h I row2-row1 | 1.20828 | 0.309 |
Var 36h NI row2-row1 | 1.17757 | 0.482 |
Var 60h I row2-row1 | 1.05382 | 1 |
Var 60h NI row2-row1 | 0.72383 | 1 |
Time course 0hI-0hNI | 1.18574 | 0.63 |
Time course 12hI-12hNI | 1.43868 | 0.015 |
Time course 36hI-36hNI | 1.66238 | 0.005 |
Time course 60hI-60hNI | 3.51591 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | 1.3829 | 1 |
transgenic ySAMdc/azygous control (red) | 1.12813 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.48295 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 0.95122 | 1 |
Manapal/WT (red) | 1.18412 | 0.413 |
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