Expression of 1-1-1.1.18.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.746770.156
27DAP/17DAP1.193680.833
39DAP/27DAP1.065630.946
41DAP/39DAP1.029890.92
42DAP/41DAP1.172721
43DAP/42DAP0.964990.898
47DAP/43DAP1.102960.689
52DAP/47DAP1.043051
57DAP/52DAP0.816350.612

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.035640.587
17DAP/reference0.955060.393
27DAP/reference0.97640.725
39DAP/reference1.016940.453
41DAP/reference1.042570.587
42DAP/reference1.09060.048
43DAP/reference0.973180.519
47DAP/reference1.008741
52DAP/reference1.000690.768
57DAP/reference0.870290.039

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.007311
27DAP/17DAP0.966860.259
39DAP/27DAP1.035210.659
41DAP/39DAP1.049660.753
42DAP/41DAP1.02450.991
43DAP/42DAP1.067680.297
47DAP/43DAP0.93810.457
52DAP/47DAP0.999070.975
57DAP/52DAP0.977040.632
57DAP/7DAP1.168821

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.94780.361
17DAP/reference0.965260.124
27DAP/reference1.024670.551
39DAP/reference0.997910.745
41DAP/reference1.001590.778
42DAP/reference1.017910.686
43DAP/reference0.944650.079
47DAP/reference1.105770.44
52DAP/reference0.955210.304
57DAP/reference0.924350.077

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.066810.355
17DAP/reference1.06630.25
27DAP/reference1.08790.471
39DAP/reference1.023230.824
41DAP/reference1.019121
42DAP/reference1.152290.043
43DAP/reference1.110420.263
47DAP/reference1.138540.042
52DAP/reference1.060420.24
57DAP/reference1.059320.193

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.928570.135
17DAP/reference1.044990.728
27DAP/reference0.898740.029
39DAP/reference0.880980.008
41DAP/reference1.228850.554
42DAP/reference1.182040.347
43DAP/reference1.153020.396
47DAP/reference1.30770.12
52DAP/reference0.991760.838
57DAP/reference1.260540.298

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.013131
26DAP/20DAP0.961291
34DAP/26DAP0.977770.961
51DAP/34DAP0.919790.611
52DAP/51DAP1.09120.579
53DAP/52DAP1.012990.882
55DAP/53DAP1.065050.79
57DAP/55DAP1.000620.97
62DAP/57DAP1.163530.04
68DAP/62DAP0.845750.135
68DAP/14DAP0.874410.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.919340.253

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.191270.075
Mature Green Tomato/Ripe Tomato1.834830.095
Immature Eggplant/Mature Eggplant1.677070.05
Ripe Pepper/Ripe Tomato0.632590.224
Mature Eggplant/Ripe Tomato1.563230.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.971070.961
1-1-2/M821.053641
12-2/M820.866780.862
12-4/M821.008081
1-3/M820.948680.441
2-1-1/M820.904881
2-1/M820.699040.322
2-6/M821.127690.695
3-2/M820.89978
4-1-1/M821.056861
4-1/M82N/AN/A
4-3-2/M821.02729
4-3/M821.22581
5-3/M820.889111
6-2/M821.044941
6-3/M821.177821
7-1/M821.068881
7-2/M821.069261
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.894860.247
IL2-6/WTpooled0.964691
IL7-5/WTpooled1.062391
IL7-3/WTpooled0.94360.418
IL12-4/WTpooled1.018771
IL1-4/WTpooled1.060461
WT/WTpooled1.022540.794

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.448230.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.014841
DC3000/delta hrp 6h1.006350.95
DC3000/delta hrp 12h1.02071
DC3000/delta hrp 24h1.183360.502

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.257110.076
DC3000 delta B/DC3000 delta AB1.075440.42

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.042121
Exp 36h1.542080.489
Exp 60h1.388760.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.035941
Var 0h1.158330.98
Var 12h I row2-row11.40010.296
Var 12h NI row2-row11.046541
Var 36h I row2-row10.95921
Var 36h NI row2-row11.055811
Var 60h I row2-row10.960140.293
Var 60h NI row2-row10.960351
Time course 0hI-0hNI1.112320.413
Time course 12hI-12hNI1.134690.064
Time course 36hI-36hNI1.244170.009
Time course 60hI-60hNI1.753810.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.079690.318
transgenic ySAMdc/azygous control (breaker)0.722250.131
transgenic ySAMdc/azygous control (red)1.06090.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.087610.08

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.529930.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.177850.105
Manapal/WT (break)0.937651
Manapal/WT (red)0.631070.181