Expression of 1-1-1.1.19.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94253 | 0.551 |
27DAP/17DAP | 0.90916 | 0.784 |
39DAP/27DAP | 0.9327 | 0.564 |
41DAP/39DAP | 1.17531 | 0.708 |
42DAP/41DAP | 1.06801 | 0.945 |
43DAP/42DAP | 1.0681 | 1 |
47DAP/43DAP | 1.04601 | 0.776 |
52DAP/47DAP | 1.02884 | 0.976 |
57DAP/52DAP | 1.02243 | 0.98 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95665 | 0.412 |
17DAP/reference | 0.92976 | 0.298 |
27DAP/reference | 0.93771 | 0.119 |
39DAP/reference | 1.01218 | 0.747 |
41DAP/reference | 1.06756 | 0.024 |
42DAP/reference | 1.03127 | 0.544 |
43DAP/reference | 0.96104 | 0.247 |
47DAP/reference | 1.03083 | 0.627 |
52DAP/reference | 0.96897 | 0.416 |
57DAP/reference | 0.87644 | 0.017 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98291 | 0.732 |
27DAP/17DAP | 1.01953 | 0.968 |
39DAP/27DAP | 1.04066 | 0.615 |
41DAP/39DAP | 0.96855 | 0.959 |
42DAP/41DAP | 1.02882 | 0.886 |
43DAP/42DAP | 1.08328 | 0.273 |
47DAP/43DAP | 0.97156 | 0.764 |
52DAP/47DAP | 1.00017 | 0.975 |
57DAP/52DAP | 0.9636 | 0.657 |
57DAP/7DAP | 1.02892 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92158 | 0.071 |
17DAP/reference | 0.98612 | 0.338 |
27DAP/reference | 0.9798 | 0.348 |
39DAP/reference | 0.9982 | 0.745 |
41DAP/reference | 0.91426 | 0.194 |
42DAP/reference | 0.8484 | 0.01 |
43DAP/reference | 0.96856 | 0.403 |
47DAP/reference | 0.86129 | 0.168 |
52DAP/reference | 0.98252 | 0.621 |
57DAP/reference | 0.97701 | 0.477 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01486 | 0.885 |
17DAP/reference | 0.9319 | 0.164 |
27DAP/reference | 0.89719 | 0.167 |
39DAP/reference | 0.95673 | 0.208 |
41DAP/reference | 0.90487 | 0.11 |
42DAP/reference | 0.86842 | 0.035 |
43DAP/reference | 1.02638 | 0.827 |
47DAP/reference | 0.88593 | 0.094 |
52DAP/reference | 0.97525 | 0.407 |
57DAP/reference | 1.02032 | 0.807 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97576 | 0.391 |
17DAP/reference | 0.9408 | 0.328 |
27DAP/reference | 1.00671 | 0.934 |
39DAP/reference | 0.95983 | 0.05 |
41DAP/reference | 0.99644 | 0.826 |
42DAP/reference | 0.92167 | 0.172 |
43DAP/reference | 0.94882 | 0.305 |
47DAP/reference | 0.88623 | 0.066 |
52DAP/reference | 0.9245 | 0.405 |
57DAP/reference | 0.67225 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99914 | 1 |
26DAP/20DAP | 0.93595 | 1 |
34DAP/26DAP | 1.00532 | 1 |
51DAP/34DAP | 1.04089 | 0.73 |
52DAP/51DAP | 1.00199 | 1 |
53DAP/52DAP | 0.99488 | 0.983 |
55DAP/53DAP | 1.17617 | 0.429 |
57DAP/55DAP | 0.94493 | 0.698 |
62DAP/57DAP | 1.11599 | 0.569 |
68DAP/62DAP | 0.9299 | 0.543 |
68DAP/14DAP | 1.0912 | 0.521 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.90398 | 0.211 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.37715 | 0.863 |
Mature Green Tomato/Ripe Tomato | 0.91957 | 0.487 |
Immature Eggplant/Mature Eggplant | 1.80343 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.93937 | 1 |
Mature Eggplant/Ripe Tomato | 2.91694 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.9176 | 0.944 |
1-1-2/M82 | 0.89766 | 0.958 |
12-2/M82 | 1.03615 | 1 |
12-4/M82 | 0.95994 | 1 |
1-3/M82 | 0.91065 | 0.441 |
2-1-1/M82 | 1.13798 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.08455 | 0.695 |
3-2/M82 | 0.95732 | |
4-1-1/M82 | 1.08292 | 1 |
4-1/M82 | 0.84478 | 1 |
4-3-2/M82 | 0.94244 | 1 |
4-3/M82 | 0.70129 | 0.509 |
5-3/M82 | 0.93655 | 1 |
6-2/M82 | 0.98017 | 1 |
6-3/M82 | 1.05924 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.97278 | 1 |
9-3-2/M82 | 0.75296 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.87638 | 0.243 |
IL2-6/WTpooled | 1.02589 | 1 |
IL7-5/WTpooled | 1.1919 | 0.792 |
IL7-3/WTpooled | 0.91323 | 1 |
IL12-4/WTpooled | 1.23024 | 0.595 |
IL1-4/WTpooled | 0.92228 | 0.457 |
WT/WTpooled | 0.94692 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.91057 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.93901 | 1 |
DC3000/delta hrp 6h | 0.92881 | 0.95 |
DC3000/delta hrp 12h | 0.98886 | 1 |
DC3000/delta hrp 24h | 0.9569 | 0.662 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.07842 | 0.441 |
DC3000 delta B/DC3000 delta AB | 1.07458 | 0.449 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.98869 | 1 |
Exp 36h | 1.30097 | 1 |
Exp 60h | 1.16606 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.88441 | 1 |
Var 0h | 0.72357 | 0.933 |
Var 12h I row2-row1 | 1.0553 | 0.379 |
Var 12h NI row2-row1 | 0.97271 | 0.906 |
Var 36h I row2-row1 | 0.89098 | 0.805 |
Var 36h NI row2-row1 | 0.77903 | 1 |
Var 60h I row2-row1 | 1.36396 | 0.562 |
Var 60h NI row2-row1 | 1.07943 | 0.904 |
Time course 0hI-0hNI | 1.0438 | 0.799 |
Time course 12hI-12hNI | 1.00657 | 0.888 |
Time course 36hI-36hNI | 0.92284 | 0.142 |
Time course 60hI-60hNI | 0.98623 | 1 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.01637 | 0.612 |
transgenic ySAMdc/azygous control (breaker) | 0.81702 | 0.251 |
transgenic ySAMdc/azygous control (red) | 1.14056 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99444 | 0.737 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.8893 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.37702 | 0.105 |
Manapal/WT (break) | 0.84351 | 0.333 |
Manapal/WT (red) | 0.69065 | 0.181 |
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