Expression of 1-1-1.1.19.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.84989 | 0.445 |
27DAP/17DAP | 1.02877 | 1 |
39DAP/27DAP | 1.60348 | 0.426 |
41DAP/39DAP | 0.5648 | |
42DAP/41DAP | 0.83195 | 1 |
43DAP/42DAP | 0.9669 | 0.909 |
47DAP/43DAP | 1.10287 | 1 |
52DAP/47DAP | 1.52558 | 0.731 |
57DAP/52DAP | 1.08142 | 0.946 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00135 | 0.844 |
17DAP/reference | 0.98047 | 0.63 |
27DAP/reference | 1.01592 | 0.925 |
39DAP/reference | 1.11649 | 0.359 |
41DAP/reference | 1.09624 | 0.034 |
42DAP/reference | 0.89675 | 0.015 |
43DAP/reference | 0.97737 | 0.728 |
47DAP/reference | 0.94602 | 0.148 |
52DAP/reference | 0.94056 | 0.319 |
57DAP/reference | 0.99055 | 0.671 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.22298 | 0.455 |
27DAP/17DAP | 1.04487 | 0.942 |
39DAP/27DAP | 1.00439 | 1 |
41DAP/39DAP | 1.06598 | 0.909 |
42DAP/41DAP | 0.97913 | 0.759 |
43DAP/42DAP | 0.91887 | 0.399 |
47DAP/43DAP | 0.87644 | 0.332 |
52DAP/47DAP | 1.15914 | 0.573 |
57DAP/52DAP | 1.30923 | 0.703 |
57DAP/7DAP | N/A | N/A |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.43322 | 0.061 |
17DAP/reference | 1.92589 | 0.006 |
27DAP/reference | 1.63715 | 0.006 |
39DAP/reference | 2.10233 | 0.005 |
41DAP/reference | 2.0054 | 0.009 |
42DAP/reference | 2.34774 | 0.006 |
43DAP/reference | 2.53847 | 0.007 |
47DAP/reference | 1.51491 | 0.279 |
52DAP/reference | 1.98781 | 0.008 |
57DAP/reference | 1.69995 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97256 | 0.669 |
17DAP/reference | 0.94179 | 0.337 |
27DAP/reference | 0.88937 | 0.188 |
39DAP/reference | 0.91854 | 0.117 |
41DAP/reference | 0.85234 | 0.054 |
42DAP/reference | 0.9513 | 0.289 |
43DAP/reference | 0.92303 | 0.414 |
47DAP/reference | 0.96649 | 0.379 |
52DAP/reference | 0.9987 | 0.666 |
57DAP/reference | 1.14651 | 0.033 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.45974 | 0.103 |
17DAP/reference | 1.16492 | 0.657 |
27DAP/reference | 1.90452 | 0.027 |
39DAP/reference | 1.72751 | 0.015 |
41DAP/reference | 1.66038 | 0.007 |
42DAP/reference | 1.76659 | 0.019 |
43DAP/reference | 1.57082 | 0.1 |
47DAP/reference | 0.8905 | 0.215 |
52DAP/reference | 1.88622 | 0.079 |
57DAP/reference | 1.34313 | 0.717 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.25491 | 0.966 |
26DAP/20DAP | 1.14177 | 0.931 |
34DAP/26DAP | 0.82156 | 0.712 |
51DAP/34DAP | 0.85662 | 0.598 |
52DAP/51DAP | 0.86667 | 1 |
53DAP/52DAP | 1.51405 | 0.134 |
55DAP/53DAP | 0.66094 | |
57DAP/55DAP | 1.16275 | 0.881 |
62DAP/57DAP | 1.33913 | 0.257 |
68DAP/62DAP | 1.02222 | 1 |
68DAP/14DAP | 1.15746 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.35077 | 0.087 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.04534 | 1 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 1.71617 | |
Ripe Pepper/Ripe Tomato | 0.58447 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.7128 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.85887 | |
1-1-2/M82 | 0.8208 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.90566 | 0.619 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.87945 | 1 |
2-1/M82 | 0.69766 | |
2-6/M82 | 0.79478 | |
3-2/M82 | 0.8906 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.88735 | 1 |
5-3/M82 | 1.15885 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.16029 | 1 |
7-1/M82 | 0.98552 | |
7-2/M82 | 0.99676 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.87084 | 0.321 |
IL2-6/WTpooled | 1.25157 | 0.46 |
IL7-5/WTpooled | 2.04939 | 0.792 |
IL7-3/WTpooled | 0.71449 | 0.294 |
IL12-4/WTpooled | 1.03307 | 0.839 |
IL1-4/WTpooled | 1.39295 | 0.426 |
WT/WTpooled | 1.01478 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.1919 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05019 | 1 |
DC3000/delta hrp 6h | 0.90587 | 0.95 |
DC3000/delta hrp 12h | 0.99565 | 1 |
DC3000/delta hrp 24h | 1.78706 | 0.079 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.8412 | 1 |
Exp 36h | 1.40996 | 1 |
Exp 60h | 1.02826 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96459 | 1 |
Var 0h | 0.70283 | 0.457 |
Var 12h I row2-row1 | 1.03389 | 0.473 |
Var 12h NI row2-row1 | 0.98802 | 1 |
Var 36h I row2-row1 | 1.08368 | 1 |
Var 36h NI row2-row1 | 1.1015 | 1 |
Var 60h I row2-row1 | 0.76734 | 0.832 |
Var 60h NI row2-row1 | 1.00075 | 1 |
Time course 0hI-0hNI | 1.12204 | 0.867 |
Time course 12hI-12hNI | 1.04699 | 0.81 |
Time course 36hI-36hNI | 1.24466 | 0.044 |
Time course 60hI-60hNI | 1.41139 | 0.16 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.11543 | 0.312 |
transgenic ySAMdc/azygous control (breaker) | 0.83419 | 0.251 |
transgenic ySAMdc/azygous control (red) | 0.96175 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.05167 | 0.1 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.24106 | 0.228 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.88377 | 1 |
Manapal/WT (break) | 1.00136 | 1 |
Manapal/WT (red) | 1.32154 | 0.222 |
|
|