Expression of 1-1-1.1.2.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.82244 | 0.281 |
27DAP/17DAP | 1.02873 | 0.923 |
39DAP/27DAP | 1.11636 | 0.8 |
41DAP/39DAP | 0.68205 | 0.1 |
42DAP/41DAP | 1.00073 | 1 |
43DAP/42DAP | 1.27418 | 0.861 |
47DAP/43DAP | 1.23772 | 0.497 |
52DAP/47DAP | 1.01122 | 0.873 |
57DAP/52DAP | 1.35374 | 0.694 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02614 | 1 |
17DAP/reference | 1.4567 | 0.031 |
27DAP/reference | 1.78046 | 0.01 |
39DAP/reference | 1.49167 | 0.017 |
41DAP/reference | 1.62433 | 0.012 |
42DAP/reference | 1.46798 | 0.001 |
43DAP/reference | 1.30662 | 0.023 |
47DAP/reference | 2.06404 | 0.001 |
52DAP/reference | 1.93528 | 0.011 |
57DAP/reference | 1.64764 | 0.011 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.44542 | 0.057 |
27DAP/17DAP | 1.33677 | 0.295 |
39DAP/27DAP | 1.07621 | 0.799 |
41DAP/39DAP | 0.93231 | 0.822 |
42DAP/41DAP | 0.97207 | 0.69 |
43DAP/42DAP | 0.75386 | 0.049 |
47DAP/43DAP | 1.04216 | 0.957 |
52DAP/47DAP | 1.45114 | 0.224 |
57DAP/52DAP | 1.59812 | 0.056 |
57DAP/7DAP | 1.4871 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.29858 | 0.1 |
17DAP/reference | 0.9912 | 0.599 |
27DAP/reference | 1.16103 | 0.107 |
39DAP/reference | 1.17845 | 0.012 |
41DAP/reference | 1.21412 | 0.038 |
42DAP/reference | 1.42373 | 0.037 |
43DAP/reference | 1.40364 | 0.023 |
47DAP/reference | 1.86902 | 0.019 |
52DAP/reference | 1.34669 | 0.041 |
57DAP/reference | 1.23356 | 0.04 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.74642 | 0.412 |
17DAP/reference | 1.34293 | 0.415 |
27DAP/reference | 1.39089 | 0.08 |
39DAP/reference | 1.7318 | 0.018 |
41DAP/reference | 1.39588 | 0.012 |
42DAP/reference | 1.66862 | 0.008 |
43DAP/reference | 0.88584 | 0.298 |
47DAP/reference | 1.56777 | 0.008 |
52DAP/reference | 1.38846 | 0.024 |
57DAP/reference | 0.95987 | 0.549 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11251 | 0.518 |
17DAP/reference | 0.96125 | 0.592 |
27DAP/reference | 1.11546 | 0.131 |
39DAP/reference | 1.43979 | 0.011 |
41DAP/reference | 0.98143 | 0.56 |
42DAP/reference | 1.2261 | 0.046 |
43DAP/reference | 1.2433 | 0.126 |
47DAP/reference | 1.33935 | 0.053 |
52DAP/reference | 1.5787 | 0.036 |
57DAP/reference | 4.00434 | 0.005 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.77859 | 0.981 |
26DAP/20DAP | 2.75725 | 0.099 |
34DAP/26DAP | 0.94973 | 0.879 |
51DAP/34DAP | 1.37987 | 0.077 |
52DAP/51DAP | 0.84096 | 0.151 |
53DAP/52DAP | 1.13562 | 0.608 |
55DAP/53DAP | 1.03088 | 0.991 |
57DAP/55DAP | 1.49021 | 0.559 |
62DAP/57DAP | 0.73562 | 0.466 |
68DAP/62DAP | 1.71529 | 0.066 |
68DAP/14DAP | 5.73191 | 0.016 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.44767 | 0.023 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.29059 | 0.075 |
Mature Green Tomato/Ripe Tomato | 1.24584 | 0.437 |
Immature Eggplant/Mature Eggplant | 0.91016 | 0.545 |
Ripe Pepper/Ripe Tomato | 1.11098 | 0.258 |
Mature Eggplant/Ripe Tomato | 1.0153 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.81235 | 0.651 |
1-1-2/M82 | 1.12254 | 1 |
12-2/M82 | 1.00747 | 1 |
12-4/M82 | 1.05978 | 1 |
1-3/M82 | 2.55872 | 0.248 |
2-1-1/M82 | 0.94504 | 1 |
2-1/M82 | 0.80323 | 0.519 |
2-6/M82 | 0.67021 | 0.501 |
3-2/M82 | 1.42554 | 0.84 |
4-1-1/M82 | 0.92445 | 1 |
4-1/M82 | 0.94505 | |
4-3-2/M82 | 0.90156 | 1 |
4-3/M82 | 1.21729 | 1 |
5-3/M82 | 0.92607 | 1 |
6-2/M82 | 0.84226 | |
6-3/M82 | 0.98685 | 1 |
7-1/M82 | 1.11551 | 1 |
7-2/M82 | 1.576 | 0.385 |
9-3-2/M82 | 1.14557 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.97355 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.98105 | 1 |
IL12-4/WTpooled | 0.87511 | 0.71 |
IL1-4/WTpooled | 0.90401 | |
WT/WTpooled | 0.99044 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.92472 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.12117 | 0.894 |
DC3000/delta hrp 6h | 1.03008 | 1 |
DC3000/delta hrp 12h | 1.01732 | 1 |
DC3000/delta hrp 24h | 1.08799 | 0.62 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.16157 | 0.29 |
DC3000 delta B/DC3000 delta AB | 1.26382 | 0.169 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.23442 | 1 |
Exp 36h | 1.42379 | 0.326 |
Exp 60h | 1.31177 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9353 | 1 |
Var 0h | 1.26776 | 0.594 |
Var 12h I row2-row1 | 1.14965 | 0.58 |
Var 12h NI row2-row1 | 1.10874 | 0.649 |
Var 36h I row2-row1 | 1.18829 | 0.309 |
Var 36h NI row2-row1 | 1.16938 | 1 |
Var 60h I row2-row1 | 0.80345 | 0.285 |
Var 60h NI row2-row1 | 1.00268 | 1 |
Time course 0hI-0hNI | 1.02905 | 0.867 |
Time course 12hI-12hNI | 1.1087 | 0.275 |
Time course 36hI-36hNI | 1.36028 | 0.005 |
Time course 60hI-60hNI | 1.25021 | 0.042 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.16519 | 0.408 |
transgenic ySAMdc/azygous control (breaker) | 0.76561 | 0.251 |
transgenic ySAMdc/azygous control (red) | 0.81516 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.34911 | 0.119 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.93983 | 0.59 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.72792 | 0.172 |
Manapal/WT (break) | 1.0333 | 1 |
Manapal/WT (red) | 1.33784 | 0.142 |
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