Expression of 1-1-1.1.2.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.822440.281
27DAP/17DAP1.028730.923
39DAP/27DAP1.116360.8
41DAP/39DAP0.682050.1
42DAP/41DAP1.000731
43DAP/42DAP1.274180.861
47DAP/43DAP1.237720.497
52DAP/47DAP1.011220.873
57DAP/52DAP1.353740.694

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.026141
17DAP/reference1.45670.031
27DAP/reference1.780460.01
39DAP/reference1.491670.017
41DAP/reference1.624330.012
42DAP/reference1.467980.001
43DAP/reference1.306620.023
47DAP/reference2.064040.001
52DAP/reference1.935280.011
57DAP/reference1.647640.011

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.445420.057
27DAP/17DAP1.336770.295
39DAP/27DAP1.076210.799
41DAP/39DAP0.932310.822
42DAP/41DAP0.972070.69
43DAP/42DAP0.753860.049
47DAP/43DAP1.042160.957
52DAP/47DAP1.451140.224
57DAP/52DAP1.598120.056
57DAP/7DAP1.48711

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.298580.1
17DAP/reference0.99120.599
27DAP/reference1.161030.107
39DAP/reference1.178450.012
41DAP/reference1.214120.038
42DAP/reference1.423730.037
43DAP/reference1.403640.023
47DAP/reference1.869020.019
52DAP/reference1.346690.041
57DAP/reference1.233560.04

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.746420.412
17DAP/reference1.342930.415
27DAP/reference1.390890.08
39DAP/reference1.73180.018
41DAP/reference1.395880.012
42DAP/reference1.668620.008
43DAP/reference0.885840.298
47DAP/reference1.567770.008
52DAP/reference1.388460.024
57DAP/reference0.959870.549

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.112510.518
17DAP/reference0.961250.592
27DAP/reference1.115460.131
39DAP/reference1.439790.011
41DAP/reference0.981430.56
42DAP/reference1.22610.046
43DAP/reference1.24330.126
47DAP/reference1.339350.053
52DAP/reference1.57870.036
57DAP/reference4.004340.005

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.778590.981
26DAP/20DAP2.757250.099
34DAP/26DAP0.949730.879
51DAP/34DAP1.379870.077
52DAP/51DAP0.840960.151
53DAP/52DAP1.135620.608
55DAP/53DAP1.030880.991
57DAP/55DAP1.490210.559
62DAP/57DAP0.735620.466
68DAP/62DAP1.715290.066
68DAP/14DAP5.731910.016

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.447670.023

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.290590.075
Mature Green Tomato/Ripe Tomato1.245840.437
Immature Eggplant/Mature Eggplant0.910160.545
Ripe Pepper/Ripe Tomato1.110980.258
Mature Eggplant/Ripe Tomato1.01531

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.812350.651
1-1-2/M821.122541
12-2/M821.007471
12-4/M821.059781
1-3/M822.558720.248
2-1-1/M820.945041
2-1/M820.803230.519
2-6/M820.670210.501
3-2/M821.425540.84
4-1-1/M820.924451
4-1/M820.94505
4-3-2/M820.901561
4-3/M821.217291
5-3/M820.926071
6-2/M820.84226
6-3/M820.986851
7-1/M821.115511
7-2/M821.5760.385
9-3-2/M821.14557

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.973551
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.981051
IL12-4/WTpooled0.875110.71
IL1-4/WTpooled0.90401
WT/WTpooled0.990441

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.924720.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.121170.894
DC3000/delta hrp 6h1.030081
DC3000/delta hrp 12h1.017321
DC3000/delta hrp 24h1.087990.62

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.161570.29
DC3000 delta B/DC3000 delta AB1.263820.169

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.234421
Exp 36h1.423790.326
Exp 60h1.311770.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.93531
Var 0h1.267760.594
Var 12h I row2-row11.149650.58
Var 12h NI row2-row11.108740.649
Var 36h I row2-row11.188290.309
Var 36h NI row2-row11.169381
Var 60h I row2-row10.803450.285
Var 60h NI row2-row11.002681
Time course 0hI-0hNI1.029050.867
Time course 12hI-12hNI1.10870.275
Time course 36hI-36hNI1.360280.005
Time course 60hI-60hNI1.250210.042

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.165190.408
transgenic ySAMdc/azygous control (breaker)0.765610.251
transgenic ySAMdc/azygous control (red)0.815161

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.349110.119

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.939830.59

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.727920.172
Manapal/WT (break)1.03331
Manapal/WT (red)1.337840.142