Expression of 1-1-1.1.20.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91334 | 0.61 |
27DAP/17DAP | 1.59269 | 0.565 |
39DAP/27DAP | 0.73712 | 0.397 |
41DAP/39DAP | 1.22559 | 0.416 |
42DAP/41DAP | 0.76596 | 0.774 |
43DAP/42DAP | 1.09765 | 1 |
47DAP/43DAP | 1.30507 | 0.595 |
52DAP/47DAP | 0.9202 | 0.619 |
57DAP/52DAP | 1.05005 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00483 | |
17DAP/reference | 1.2831 | 0.306 |
27DAP/reference | 1.01046 | 1 |
39DAP/reference | 1.00841 | 0.901 |
41DAP/reference | 1.05248 | |
42DAP/reference | 1.02405 | 0.517 |
43DAP/reference | 0.7334 | |
47DAP/reference | 1.02879 | 0.627 |
52DAP/reference | 1.02237 | 1 |
57DAP/reference | 0.36118 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05138 | 0.99 |
27DAP/17DAP | 1.1969 | 0.719 |
39DAP/27DAP | 1.04553 | 0.854 |
41DAP/39DAP | 0.87859 | 0.446 |
42DAP/41DAP | 1.14098 | 0.687 |
43DAP/42DAP | 1.15179 | 0.162 |
47DAP/43DAP | 1.30563 | 0.331 |
52DAP/47DAP | 1.14622 | 0.823 |
57DAP/52DAP | 0.78032 | 0.29 |
57DAP/7DAP | 0.8429 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89353 | 0.157 |
17DAP/reference | 0.87529 | 0.013 |
27DAP/reference | 0.85386 | 0.02 |
39DAP/reference | 0.74334 | 0.015 |
41DAP/reference | 0.78056 | 0.031 |
42DAP/reference | 0.71986 | 0.015 |
43DAP/reference | 0.83283 | 0.082 |
47DAP/reference | 0.89536 | 0.222 |
52DAP/reference | 1.02937 | 1 |
57DAP/reference | 0.87926 | 0.056 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9754 | 0.688 |
17DAP/reference | 0.85331 | 0.068 |
27DAP/reference | 0.80984 | 0.229 |
39DAP/reference | 0.94807 | 0.359 |
41DAP/reference | 0.9541 | 0.472 |
42DAP/reference | 0.89563 | 0.237 |
43DAP/reference | 0.90989 | 0.17 |
47DAP/reference | 0.85203 | 0.159 |
52DAP/reference | 0.91933 | 0.22 |
57DAP/reference | 1.01648 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85051 | 0.104 |
17DAP/reference | 0.91445 | 0.313 |
27DAP/reference | 0.86449 | 0.097 |
39DAP/reference | 0.84415 | 0.031 |
41DAP/reference | 0.9267 | 0.293 |
42DAP/reference | 0.86561 | 0.134 |
43DAP/reference | 0.92688 | 0.432 |
47DAP/reference | 0.93175 | 0.278 |
52DAP/reference | 1.03261 | 0.735 |
57DAP/reference | 1.05963 | 0.452 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.91781 | 1 |
26DAP/20DAP | 0.99706 | 1 |
34DAP/26DAP | 0.90687 | |
51DAP/34DAP | 0.69806 | 0.125 |
52DAP/51DAP | 1.38888 | |
53DAP/52DAP | 1.04366 | |
55DAP/53DAP | 1.20751 | 0.722 |
57DAP/55DAP | 1.28669 | 0.927 |
62DAP/57DAP | 1.08818 | 0.8 |
68DAP/62DAP | 1.00079 | 0.885 |
68DAP/14DAP | 1.45157 | 0.802 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.75031 | 0.092 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.9312 | 0.522 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.84857 | 0.673 |
1-1-2/M82 | 0.79602 | 0.804 |
12-2/M82 | 1.10081 | |
12-4/M82 | 1.30295 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 1.27669 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.94817 | 1 |
3-2/M82 | 1.11921 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.99046 | 1 |
4-3-2/M82 | 0.87139 | 0.487 |
4-3/M82 | 0.64539 | |
5-3/M82 | 1.08694 | 0.572 |
6-2/M82 | 0.51256 | |
6-3/M82 | 0.84602 | 1 |
7-1/M82 | 1.04095 | |
7-2/M82 | 0.70625 | |
9-3-2/M82 | 0.85318 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.69936 | 0.243 |
IL2-6/WTpooled | 1.26967 | 0.415 |
IL7-5/WTpooled | 1.19533 | 0.75 |
IL7-3/WTpooled | 0.41334 | |
IL12-4/WTpooled | 1.04799 | 1 |
IL1-4/WTpooled | 0.99264 | 1 |
WT/WTpooled | 0.78377 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.82413 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06073 | 0.921 |
DC3000/delta hrp 6h | 0.72176 | 0.95 |
DC3000/delta hrp 12h | 1.04544 | 1 |
DC3000/delta hrp 24h | 0.9841 | 0.945 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.97839 | 1 |
Exp 36h | 0.84531 | 0.539 |
Exp 60h | 0.7679 | 0.249 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.12133 | 0.189 |
Var 12h NI row2-row1 | 0.71823 | |
Var 36h I row2-row1 | 1.18624 | 1 |
Var 36h NI row2-row1 | 0.97524 | 0.852 |
Var 60h I row2-row1 | 1.31849 | |
Var 60h NI row2-row1 | 1.12017 | 1 |
Time course 0hI-0hNI | 0.98655 | 1 |
Time course 12hI-12hNI | 0.91799 | 0.454 |
Time course 36hI-36hNI | 1.04788 | |
Time course 60hI-60hNI | 0.83925 | 0.047 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 2.03726 | 0.511 |
transgenic ySAMdc/azygous control (breaker) | 1.27533 | 1 |
transgenic ySAMdc/azygous control (red) | 1.04001 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99441 | 0.806 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.26895 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.92257 | 1 |
Manapal/WT (break) | 1.10733 | 1 |
Manapal/WT (red) | 0.75737 | 0.274 |
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