Expression of 1-1-1.1.20.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.913340.61
27DAP/17DAP1.592690.565
39DAP/27DAP0.737120.397
41DAP/39DAP1.225590.416
42DAP/41DAP0.765960.774
43DAP/42DAP1.097651
47DAP/43DAP1.305070.595
52DAP/47DAP0.92020.619
57DAP/52DAP1.050051

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.00483
17DAP/reference1.28310.306
27DAP/reference1.010461
39DAP/reference1.008410.901
41DAP/reference1.05248
42DAP/reference1.024050.517
43DAP/reference0.7334
47DAP/reference1.028790.627
52DAP/reference1.022371
57DAP/reference0.36118

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.051380.99
27DAP/17DAP1.19690.719
39DAP/27DAP1.045530.854
41DAP/39DAP0.878590.446
42DAP/41DAP1.140980.687
43DAP/42DAP1.151790.162
47DAP/43DAP1.305630.331
52DAP/47DAP1.146220.823
57DAP/52DAP0.780320.29
57DAP/7DAP0.84291

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.893530.157
17DAP/reference0.875290.013
27DAP/reference0.853860.02
39DAP/reference0.743340.015
41DAP/reference0.780560.031
42DAP/reference0.719860.015
43DAP/reference0.832830.082
47DAP/reference0.895360.222
52DAP/reference1.029371
57DAP/reference0.879260.056

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.97540.688
17DAP/reference0.853310.068
27DAP/reference0.809840.229
39DAP/reference0.948070.359
41DAP/reference0.95410.472
42DAP/reference0.895630.237
43DAP/reference0.909890.17
47DAP/reference0.852030.159
52DAP/reference0.919330.22
57DAP/reference1.016481

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.850510.104
17DAP/reference0.914450.313
27DAP/reference0.864490.097
39DAP/reference0.844150.031
41DAP/reference0.92670.293
42DAP/reference0.865610.134
43DAP/reference0.926880.432
47DAP/reference0.931750.278
52DAP/reference1.032610.735
57DAP/reference1.059630.452

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.917811
26DAP/20DAP0.997061
34DAP/26DAP0.90687
51DAP/34DAP0.698060.125
52DAP/51DAP1.38888
53DAP/52DAP1.04366
55DAP/53DAP1.207510.722
57DAP/55DAP1.286690.927
62DAP/57DAP1.088180.8
68DAP/62DAP1.000790.885
68DAP/14DAP1.451570.802

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.750310.092

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.93120.522
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.848570.673
1-1-2/M820.796020.804
12-2/M821.10081
12-4/M821.302951
1-3/M82N/AN/A
2-1-1/M821.27669
2-1/M82N/AN/A
2-6/M820.948171
3-2/M821.11921
4-1-1/M82N/AN/A
4-1/M820.990461
4-3-2/M820.871390.487
4-3/M820.64539
5-3/M821.086940.572
6-2/M820.51256
6-3/M820.846021
7-1/M821.04095
7-2/M820.70625
9-3-2/M820.853180.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.699360.243
IL2-6/WTpooled1.269670.415
IL7-5/WTpooled1.195330.75
IL7-3/WTpooled0.41334
IL12-4/WTpooled1.047991
IL1-4/WTpooled0.992641
WT/WTpooled0.783771

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.824130.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.060730.921
DC3000/delta hrp 6h0.721760.95
DC3000/delta hrp 12h1.045441
DC3000/delta hrp 24h0.98410.945

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.978391
Exp 36h0.845310.539
Exp 60h0.76790.249

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row11.121330.189
Var 12h NI row2-row10.71823
Var 36h I row2-row11.186241
Var 36h NI row2-row10.975240.852
Var 60h I row2-row11.31849
Var 60h NI row2-row11.120171
Time course 0hI-0hNI0.986551
Time course 12hI-12hNI0.917990.454
Time course 36hI-36hNI1.04788
Time course 60hI-60hNI0.839250.047

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)2.037260.511
transgenic ySAMdc/azygous control (breaker)1.275331
transgenic ySAMdc/azygous control (red)1.040010.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.994410.806

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.268950.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.922571
Manapal/WT (break)1.107331
Manapal/WT (red)0.757370.274