Expression of 1-1-1.1.20.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.091080.838
27DAP/17DAP0.960410.947
39DAP/27DAP1.178050.643
41DAP/39DAP1.090590.871
42DAP/41DAP1.055750.967
43DAP/42DAP1.76780.069
47DAP/43DAP0.844790.51
52DAP/47DAP1.414620.506
57DAP/52DAP0.922970.926

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.027090.693
17DAP/reference0.993420.904
27DAP/reference1.42620.446
39DAP/reference0.970290.72
41DAP/reference1.20380.187
42DAP/reference0.982960.484
43DAP/referenceN/AN/A
47DAP/reference1.053540.148
52DAP/reference0.914150.292
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.911730.629
27DAP/17DAP0.909970.58
39DAP/27DAP1.005341
41DAP/39DAP1.018331
42DAP/41DAP1.063531
43DAP/42DAP1.065390.513
47DAP/43DAP0.981150.911
52DAP/47DAP0.973880.902
57DAP/52DAP0.986920.828
57DAP/7DAP0.78971

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.216630.026
17DAP/reference3.537270.006
27DAP/reference2.576850.006
39DAP/reference3.218380.005
41DAP/reference3.070820.01
42DAP/reference3.394160.006
43DAP/reference4.446470.007
47DAP/reference2.483240.075
52DAP/reference3.089150.007
57DAP/reference2.709940.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.057410.724
17DAP/reference1.114570.107
27DAP/reference1.053670.607
39DAP/reference1.011491
41DAP/reference1.032320.91
42DAP/reference0.955750.289
43DAP/reference0.871050.32
47DAP/reference0.966840.5
52DAP/reference1.026260.838
57DAP/reference1.070590.398

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.396180.025
17DAP/reference1.588350.398
27DAP/reference3.651880.02
39DAP/reference3.17020.009
41DAP/reference3.163170.007
42DAP/reference3.137010.009
43DAP/reference4.024410.006
47DAP/reference1.032310.655
52DAP/reference3.5350.054
57DAP/reference2.826210.385

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.907390.807
26DAP/20DAP0.998681
34DAP/26DAP1.009181
51DAP/34DAP1.099930.339
52DAP/51DAP0.999181
53DAP/52DAP1.001971
55DAP/53DAP0.909620.115
57DAP/55DAP1.379920.214
62DAP/57DAP1.001541
68DAP/62DAP1.131290.398
68DAP/14DAP1.079390.578

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.91490.224

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.707890.23
Mature Green Tomato/Ripe Tomato0.508760.031
Immature Eggplant/Mature Eggplant1.669730.053
Ripe Pepper/Ripe Tomato0.751541
Mature Eggplant/Ripe Tomato0.679511

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.95398
1-1-2/M820.92049
12-2/M82N/AN/A
12-4/M820.915420.358
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M820.94502
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.896451
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.028371
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.899810.394
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.152440.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.058260.921
DC3000/delta hrp 6h0.945370.95
DC3000/delta hrp 12h1.130561
DC3000/delta hrp 24h1.257940.192

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.333660.145
DC3000 delta B/DC3000 delta AB1.050870.586

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.04171
Exp 36h1.375280.693
Exp 60h1.470090.227

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.999641
Var 0hN/AN/A
Var 12h I row2-row11.109180.196
Var 12h NI row2-row10.887840.546
Var 36h I row2-row10.936641
Var 36h NI row2-row10.949120.791
Var 60h I row2-row10.952280.952
Var 60h NI row2-row11.068151
Time course 0hI-0hNI1.10330.799
Time course 12hI-12hNI1.039980.703
Time course 36hI-36hNI1.105290.401
Time course 60hI-60hNI1.476560.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.031050.482
transgenic ySAMdc/azygous control (breaker)0.969331
transgenic ySAMdc/azygous control (red)0.933731

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.978360.568

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.05361

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.098850.307
Manapal/WT (break)0.981661
Manapal/WT (red)1.29130.413