Expression of 1-1-1.1.3.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.02921
27DAP/17DAP1.16541
39DAP/27DAP1.324280.473
41DAP/39DAP1.165250.423
42DAP/41DAP0.798090.774
43DAP/42DAP0.860070.717
47DAP/43DAP1.114570.733
52DAP/47DAP1.407450.549
57DAP/52DAP1.162060.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.704180.76
17DAP/referenceN/AN/A
27DAP/reference0.801770.011
39DAP/reference0.608470.009
41DAP/referenceN/AN/A
42DAP/reference0.61045
43DAP/referenceN/AN/A
47DAP/reference1.45007
52DAP/referenceN/AN/A
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.982590.75
27DAP/17DAP1.149010.426
39DAP/27DAP1.167630.394
41DAP/39DAP0.909730.662
42DAP/41DAP1.117810.263
43DAP/42DAP1.096130.176
47DAP/43DAP1.005821
52DAP/47DAP1.084420.766
57DAP/52DAP1.339670.104
57DAP/7DAP1.61201

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.034520.747
17DAP/reference1.095370.399
27DAP/reference0.978760.494
39DAP/reference1.14230.436
41DAP/reference1.068830.199
42DAP/reference1.215860.1
43DAP/reference0.928650.252
47DAP/reference1.119380.647
52DAP/reference1.016380.941
57DAP/reference0.822250.232

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.04557
17DAP/reference1.08859
27DAP/reference0.95735
39DAP/referenceN/AN/A
41DAP/reference1.615390.459
42DAP/referenceN/AN/A
43DAP/reference1.592670.009
47DAP/reference0.61473
52DAP/reference0.70746
57DAP/reference0.56573

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.037491
17DAP/reference0.912690.462
27DAP/reference0.904690.442
39DAP/reference1.999770.451
41DAP/reference1.139970.333
42DAP/reference1.262640.062
43DAP/reference0.904880.237
47DAP/reference1.324590.562
52DAP/reference1.207140.649
57DAP/reference1.000430.873

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.6267
26DAP/20DAP1.736720.366
34DAP/26DAP0.989671
51DAP/34DAP1.42490.081
52DAP/51DAP0.99061
53DAP/52DAP2.255940.02
55DAP/53DAP1.103680.555
57DAP/55DAP0.463270.036
62DAP/57DAP0.85779
68DAP/62DAP0.64388
68DAP/14DAP0.91254

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.995940.696

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.728680.2
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato1.13378

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.103531
1-1-2/M820.99329
12-2/M821.022671
12-4/M821.424960.694
1-3/M821.03322
2-1-1/M822.35343
2-1/M82N/AN/A
2-6/M821.04217
3-2/M820.83469
4-1-1/M82N/AN/A
4-1/M821.02611
4-3-2/M821.086681
4-3/M820.897591
5-3/M820.982451
6-2/M820.86977
6-3/M821.115461
7-1/M82N/AN/A
7-2/M820.89371
9-3-2/M821.17829

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.62560.365
IL2-6/WTpooled1.12667
IL7-5/WTpooled2.63028
IL7-3/WTpooled1.03532
IL12-4/WTpooled1.033081
IL1-4/WTpooled1.086741
WT/WTpooled1.088721

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.931850.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.962981
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h0.44519
DC3000/delta hrp 24h1.030970.673

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.229470.042
DC3000 delta B/DC3000 delta AB1.135890.381

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60h0.958060.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.988831
Var 0h0.921941
Var 12h I row2-row11.125770.613
Var 12h NI row2-row11.152440.649
Var 36h I row2-row11.18660.298
Var 36h NI row2-row11.118061
Var 60h I row2-row10.749450.285
Var 60h NI row2-row10.913470.932
Time course 0hI-0hNI0.981420.943
Time course 12hI-12hNI1.098270.172
Time course 36hI-36hNI1.368510.006
Time course 60hI-60hNI1.940320.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.770610.931
transgenic ySAMdc/azygous control (breaker)1.04731
transgenic ySAMdc/azygous control (red)0.864361

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.170950.381
Manapal/WT (red)N/AN/A