Expression of 1-1-1.1.3.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.0292 | 1 |
27DAP/17DAP | 1.1654 | 1 |
39DAP/27DAP | 1.32428 | 0.473 |
41DAP/39DAP | 1.16525 | 0.423 |
42DAP/41DAP | 0.79809 | 0.774 |
43DAP/42DAP | 0.86007 | 0.717 |
47DAP/43DAP | 1.11457 | 0.733 |
52DAP/47DAP | 1.40745 | 0.549 |
57DAP/52DAP | 1.16206 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.70418 | 0.76 |
17DAP/reference | N/A | N/A |
27DAP/reference | 0.80177 | 0.011 |
39DAP/reference | 0.60847 | 0.009 |
41DAP/reference | N/A | N/A |
42DAP/reference | 0.61045 | |
43DAP/reference | N/A | N/A |
47DAP/reference | 1.45007 | |
52DAP/reference | N/A | N/A |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98259 | 0.75 |
27DAP/17DAP | 1.14901 | 0.426 |
39DAP/27DAP | 1.16763 | 0.394 |
41DAP/39DAP | 0.90973 | 0.662 |
42DAP/41DAP | 1.11781 | 0.263 |
43DAP/42DAP | 1.09613 | 0.176 |
47DAP/43DAP | 1.00582 | 1 |
52DAP/47DAP | 1.08442 | 0.766 |
57DAP/52DAP | 1.33967 | 0.104 |
57DAP/7DAP | 1.61201 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03452 | 0.747 |
17DAP/reference | 1.09537 | 0.399 |
27DAP/reference | 0.97876 | 0.494 |
39DAP/reference | 1.1423 | 0.436 |
41DAP/reference | 1.06883 | 0.199 |
42DAP/reference | 1.21586 | 0.1 |
43DAP/reference | 0.92865 | 0.252 |
47DAP/reference | 1.11938 | 0.647 |
52DAP/reference | 1.01638 | 0.941 |
57DAP/reference | 0.82225 | 0.232 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04557 | |
17DAP/reference | 1.08859 | |
27DAP/reference | 0.95735 | |
39DAP/reference | N/A | N/A |
41DAP/reference | 1.61539 | 0.459 |
42DAP/reference | N/A | N/A |
43DAP/reference | 1.59267 | 0.009 |
47DAP/reference | 0.61473 | |
52DAP/reference | 0.70746 | |
57DAP/reference | 0.56573 | |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03749 | 1 |
17DAP/reference | 0.91269 | 0.462 |
27DAP/reference | 0.90469 | 0.442 |
39DAP/reference | 1.99977 | 0.451 |
41DAP/reference | 1.13997 | 0.333 |
42DAP/reference | 1.26264 | 0.062 |
43DAP/reference | 0.90488 | 0.237 |
47DAP/reference | 1.32459 | 0.562 |
52DAP/reference | 1.20714 | 0.649 |
57DAP/reference | 1.00043 | 0.873 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.6267 | |
26DAP/20DAP | 1.73672 | 0.366 |
34DAP/26DAP | 0.98967 | 1 |
51DAP/34DAP | 1.4249 | 0.081 |
52DAP/51DAP | 0.9906 | 1 |
53DAP/52DAP | 2.25594 | 0.02 |
55DAP/53DAP | 1.10368 | 0.555 |
57DAP/55DAP | 0.46327 | 0.036 |
62DAP/57DAP | 0.85779 | |
68DAP/62DAP | 0.64388 | |
68DAP/14DAP | 0.91254 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.99594 | 0.696 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 0.72868 | 0.2 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 1.13378 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.10353 | 1 |
1-1-2/M82 | 0.99329 | |
12-2/M82 | 1.02267 | 1 |
12-4/M82 | 1.42496 | 0.694 |
1-3/M82 | 1.03322 | |
2-1-1/M82 | 2.35343 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.04217 | |
3-2/M82 | 0.83469 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.02611 | |
4-3-2/M82 | 1.08668 | 1 |
4-3/M82 | 0.89759 | 1 |
5-3/M82 | 0.98245 | 1 |
6-2/M82 | 0.86977 | |
6-3/M82 | 1.11546 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.89371 | |
9-3-2/M82 | 1.17829 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.6256 | 0.365 |
IL2-6/WTpooled | 1.12667 | |
IL7-5/WTpooled | 2.63028 | |
IL7-3/WTpooled | 1.03532 | |
IL12-4/WTpooled | 1.03308 | 1 |
IL1-4/WTpooled | 1.08674 | 1 |
WT/WTpooled | 1.08872 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.93185 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96298 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 0.44519 | |
DC3000/delta hrp 24h | 1.03097 | 0.673 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.22947 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.13589 | 0.381 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | 0.95806 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98883 | 1 |
Var 0h | 0.92194 | 1 |
Var 12h I row2-row1 | 1.12577 | 0.613 |
Var 12h NI row2-row1 | 1.15244 | 0.649 |
Var 36h I row2-row1 | 1.1866 | 0.298 |
Var 36h NI row2-row1 | 1.11806 | 1 |
Var 60h I row2-row1 | 0.74945 | 0.285 |
Var 60h NI row2-row1 | 0.91347 | 0.932 |
Time course 0hI-0hNI | 0.98142 | 0.943 |
Time course 12hI-12hNI | 1.09827 | 0.172 |
Time course 36hI-36hNI | 1.36851 | 0.006 |
Time course 60hI-60hNI | 1.94032 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.77061 | 0.931 |
transgenic ySAMdc/azygous control (breaker) | 1.0473 | 1 |
transgenic ySAMdc/azygous control (red) | 0.86436 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.17095 | 0.381 |
Manapal/WT (red) | N/A | N/A |
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