Expression of 1-1-1.1.3.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.078590.977
27DAP/17DAP1.359020.622
39DAP/27DAP0.87450.414
41DAP/39DAP1.15350.447
42DAP/41DAP1.014951
43DAP/42DAP1.052431
47DAP/43DAP1.29990.42
52DAP/47DAP0.928040.777
57DAP/52DAP0.990020.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.357130.011
17DAP/reference1.414580.012
27DAP/reference1.216620.027
39DAP/reference1.262240.01
41DAP/reference1.715960.029
42DAP/reference1.246430.005
43DAP/reference1.314620.518
47DAP/reference1.172750.096
52DAP/reference1.137270.108
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.163650.189
27DAP/17DAP0.935180.475
39DAP/27DAP1.090170.499
41DAP/39DAP0.966160.923
42DAP/41DAP1.113050.186
43DAP/42DAP0.918170.336
47DAP/43DAP1.044890.844
52DAP/47DAP0.952560.848
57DAP/52DAP0.92930.528
57DAP/7DAP1.044241

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.84208
17DAP/reference0.93910.253
27DAP/reference1.024040.804
39DAP/reference0.889160.095
41DAP/reference0.751690.016
42DAP/reference0.708630.014
43DAP/reference0.770520.019
47DAP/reference0.936910.504
52DAP/reference0.781840.022
57DAP/reference0.813980.008

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.458640.035
17DAP/reference1.626210.012
27DAP/reference1.265650.02
39DAP/reference1.269110.16
41DAP/reference1.144120.157
42DAP/reference0.93310.212
43DAP/reference1.392660.012
47DAP/reference1.066550.256
52DAP/reference1.497660.026
57DAP/reference1.780960.334

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.128190.067
17DAP/reference1.231220.097
27DAP/reference1.090620.325
39DAP/reference0.99390.755
41DAP/reference1.000770.826
42DAP/reference1.033290.818
43DAP/reference0.905460.171
47DAP/reference1.163920.239
52DAP/reference0.953310.573
57DAP/reference0.901890.229

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.979841
26DAP/20DAP1.04240.931
34DAP/26DAP0.930670.848
51DAP/34DAP1.210960.746
52DAP/51DAP0.872891
53DAP/52DAP1.1580.221
55DAP/53DAP0.983060.838
57DAP/55DAP1.133670.906
62DAP/57DAPN/AN/A
68DAP/62DAP0.814030.059
68DAP/14DAP0.768260.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.085250.466

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.908770.503
Mature Green Tomato/Ripe Tomato0.773490.096
Immature Eggplant/Mature Eggplant1.276610.088
Ripe Pepper/Ripe Tomato0.979681
Mature Eggplant/Ripe Tomato1.13741

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.28296
1-1-2/M821.146921
12-2/M820.50923
12-4/M821.094491
1-3/M821.720670.277
2-1-1/M821.37287
2-1/M821.1459
2-6/M821.057081
3-2/M820.944441
4-1-1/M820.84017
4-1/M821.08008
4-3-2/M821.153831
4-3/M821.326751
5-3/M821.173851
6-2/M820.98745
6-3/M820.919281
7-1/M820.85617
7-2/M821.520440.385
9-3-2/M821.095441

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.904091
IL2-6/WTpooled1.110390.415
IL7-5/WTpooled0.910371
IL7-3/WTpooled1.096441
IL12-4/WTpooled0.803110.71
IL1-4/WTpooled0.949210.834
WT/WTpooled1.03381

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.001191

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.891371
DC3000/delta hrp 6h1.064691
DC3000/delta hrp 12h1.186951
DC3000/delta hrp 24h0.751650.037

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.053740.598
DC3000 delta B/DC3000 delta AB0.952020.729

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.064711
Exp 36h1.223070.693
Exp 60h1.233720.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.045441
Var 0h1.083250.936
Var 12h I row2-row10.899760.363
Var 12h NI row2-row11.044491
Var 36h I row2-row10.992591
Var 36h NI row2-row11.475131
Var 60h I row2-row10.891550.582
Var 60h NI row2-row10.883910.866
Time course 0hI-0hNI0.998931
Time course 12hI-12hNI0.963630.738
Time course 36hI-36hNI1.002390.874
Time course 60hI-60hNI1.517890.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.962740.529
transgenic ySAMdc/azygous control (breaker)0.82010.251
transgenic ySAMdc/azygous control (red)1.006941

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.993450.609

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.892071
Manapal/WT (break)0.943151
Manapal/WT (red)3.012450.142