Expression of 1-1-1.1.3.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.108340.697
27DAP/17DAP1.1570.849
39DAP/27DAP0.794320.325
41DAP/39DAP1.241810.459
42DAP/41DAP1.026221
43DAP/42DAP1.105641
47DAP/43DAP1.409410.448
52DAP/47DAP0.682640.187
57DAP/52DAP0.928230.845

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.222450.049
17DAP/reference1.039010.154
27DAP/reference0.906480.444
39DAP/reference0.861170.5
41DAP/reference1.017940.714
42DAP/reference1.177890.13
43DAP/reference0.55802
47DAP/reference1.132990.001
52DAP/reference1.066291
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.858230.083
27DAP/17DAP1.032710.923
39DAP/27DAP1.053830.565
41DAP/39DAP1.030460.827
42DAP/41DAP0.972530.772
43DAP/42DAP0.999391
47DAP/43DAP1.010670.956
52DAP/47DAP1.040330.862
57DAP/52DAP0.914280.267
57DAP/7DAP0.821391

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.362910.058
17DAP/reference1.193810.297
27DAP/reference0.798490.024
39DAP/reference0.992210.474
41DAP/reference1.215170.191
42DAP/reference1.274390.405
43DAP/reference1.000480.637
47DAP/reference1.10350.595
52DAP/reference1.233160.459
57DAP/reference1.154090.468

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.094840.16
17DAP/reference1.133950.12
27DAP/reference1.052120.535
39DAP/reference1.207060.15
41DAP/reference1.109960.587
42DAP/reference1.214240.066
43DAP/reference1.077370.748
47DAP/reference1.154880.052
52DAP/reference1.135660.024
57DAP/reference0.965750.61

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.066630.827
17DAP/reference1.251790.206
27DAP/reference0.84320.397
39DAP/reference0.98460.643
41DAP/reference0.992650.682
42DAP/reference1.068860.818
43DAP/reference1.212980.131
47DAP/reference1.093430.279
52DAP/reference0.915320.493
57DAP/reference1.253780.031

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.025270.878
26DAP/20DAP0.9631
34DAP/26DAP0.890070.728
51DAP/34DAP1.096240.352
52DAP/51DAP1.004141
53DAP/52DAP1.020241
55DAP/53DAP0.954240.698
57DAP/55DAP1.007910.968
62DAP/57DAP0.85741
68DAP/62DAP0.990560.914
68DAP/14DAP0.93971

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.903430.341

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.763510.261
Mature Green Tomato/Ripe Tomato1.311830.149
Immature Eggplant/Mature Eggplant0.991051
Ripe Pepper/Ripe Tomato1.046321
Mature Eggplant/Ripe Tomato0.82421

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.035470.409
1-1-2/M821.087691
12-2/M821.067011
12-4/M821.110241
1-3/M820.887590.441
2-1-1/M821.213210.343
2-1/M821.01816
2-6/M821.242110.594
3-2/M820.85997
4-1-1/M820.947231
4-1/M821.198021
4-3-2/M82N/AN/A
4-3/M820.914310.46
5-3/M821.086471
6-2/M820.912141
6-3/M821.058641
7-1/M821.169030.598
7-2/M820.96921
9-3-2/M820.931040.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.260390.277
IL2-6/WTpooled1.307290.584
IL7-5/WTpooled1.592720.792
IL7-3/WTpooled0.864350.298
IL12-4/WTpooled1.243670.624
IL1-4/WTpooled1.148861
WT/WTpooled1.030651

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.053740.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.829230.839
DC3000/delta hrp 6h1.054221
DC3000/delta hrp 12h0.982761
DC3000/delta hrp 24h1.241470.567

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.079210.648
DC3000 delta B/DC3000 delta AB1.094870.381

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.97391
Exp 36h0.844440.623
Exp 60h0.964590.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.942720.485
transgenic ySAMdc/azygous control (breaker)0.926730.49
transgenic ySAMdc/azygous control (red)0.930331

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.954540.095

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.094880.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.131910.14
Manapal/WT (break)0.966621
Manapal/WT (red)0.911390.36