Expression of 1-1-1.1.3.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10834 | 0.697 |
27DAP/17DAP | 1.157 | 0.849 |
39DAP/27DAP | 0.79432 | 0.325 |
41DAP/39DAP | 1.24181 | 0.459 |
42DAP/41DAP | 1.02622 | 1 |
43DAP/42DAP | 1.10564 | 1 |
47DAP/43DAP | 1.40941 | 0.448 |
52DAP/47DAP | 0.68264 | 0.187 |
57DAP/52DAP | 0.92823 | 0.845 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.22245 | 0.049 |
17DAP/reference | 1.03901 | 0.154 |
27DAP/reference | 0.90648 | 0.444 |
39DAP/reference | 0.86117 | 0.5 |
41DAP/reference | 1.01794 | 0.714 |
42DAP/reference | 1.17789 | 0.13 |
43DAP/reference | 0.55802 | |
47DAP/reference | 1.13299 | 0.001 |
52DAP/reference | 1.06629 | 1 |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.85823 | 0.083 |
27DAP/17DAP | 1.03271 | 0.923 |
39DAP/27DAP | 1.05383 | 0.565 |
41DAP/39DAP | 1.03046 | 0.827 |
42DAP/41DAP | 0.97253 | 0.772 |
43DAP/42DAP | 0.99939 | 1 |
47DAP/43DAP | 1.01067 | 0.956 |
52DAP/47DAP | 1.04033 | 0.862 |
57DAP/52DAP | 0.91428 | 0.267 |
57DAP/7DAP | 0.82139 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.36291 | 0.058 |
17DAP/reference | 1.19381 | 0.297 |
27DAP/reference | 0.79849 | 0.024 |
39DAP/reference | 0.99221 | 0.474 |
41DAP/reference | 1.21517 | 0.191 |
42DAP/reference | 1.27439 | 0.405 |
43DAP/reference | 1.00048 | 0.637 |
47DAP/reference | 1.1035 | 0.595 |
52DAP/reference | 1.23316 | 0.459 |
57DAP/reference | 1.15409 | 0.468 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09484 | 0.16 |
17DAP/reference | 1.13395 | 0.12 |
27DAP/reference | 1.05212 | 0.535 |
39DAP/reference | 1.20706 | 0.15 |
41DAP/reference | 1.10996 | 0.587 |
42DAP/reference | 1.21424 | 0.066 |
43DAP/reference | 1.07737 | 0.748 |
47DAP/reference | 1.15488 | 0.052 |
52DAP/reference | 1.13566 | 0.024 |
57DAP/reference | 0.96575 | 0.61 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06663 | 0.827 |
17DAP/reference | 1.25179 | 0.206 |
27DAP/reference | 0.8432 | 0.397 |
39DAP/reference | 0.9846 | 0.643 |
41DAP/reference | 0.99265 | 0.682 |
42DAP/reference | 1.06886 | 0.818 |
43DAP/reference | 1.21298 | 0.131 |
47DAP/reference | 1.09343 | 0.279 |
52DAP/reference | 0.91532 | 0.493 |
57DAP/reference | 1.25378 | 0.031 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.02527 | 0.878 |
26DAP/20DAP | 0.963 | 1 |
34DAP/26DAP | 0.89007 | 0.728 |
51DAP/34DAP | 1.09624 | 0.352 |
52DAP/51DAP | 1.00414 | 1 |
53DAP/52DAP | 1.02024 | 1 |
55DAP/53DAP | 0.95424 | 0.698 |
57DAP/55DAP | 1.00791 | 0.968 |
62DAP/57DAP | 0.85741 | |
68DAP/62DAP | 0.99056 | 0.914 |
68DAP/14DAP | 0.9397 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.90343 | 0.341 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.76351 | 0.261 |
Mature Green Tomato/Ripe Tomato | 1.31183 | 0.149 |
Immature Eggplant/Mature Eggplant | 0.99105 | 1 |
Ripe Pepper/Ripe Tomato | 1.04632 | 1 |
Mature Eggplant/Ripe Tomato | 0.8242 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.03547 | 0.409 |
1-1-2/M82 | 1.08769 | 1 |
12-2/M82 | 1.06701 | 1 |
12-4/M82 | 1.11024 | 1 |
1-3/M82 | 0.88759 | 0.441 |
2-1-1/M82 | 1.21321 | 0.343 |
2-1/M82 | 1.01816 | |
2-6/M82 | 1.24211 | 0.594 |
3-2/M82 | 0.85997 | |
4-1-1/M82 | 0.94723 | 1 |
4-1/M82 | 1.19802 | 1 |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 0.91431 | 0.46 |
5-3/M82 | 1.08647 | 1 |
6-2/M82 | 0.91214 | 1 |
6-3/M82 | 1.05864 | 1 |
7-1/M82 | 1.16903 | 0.598 |
7-2/M82 | 0.9692 | 1 |
9-3-2/M82 | 0.93104 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.26039 | 0.277 |
IL2-6/WTpooled | 1.30729 | 0.584 |
IL7-5/WTpooled | 1.59272 | 0.792 |
IL7-3/WTpooled | 0.86435 | 0.298 |
IL12-4/WTpooled | 1.24367 | 0.624 |
IL1-4/WTpooled | 1.14886 | 1 |
WT/WTpooled | 1.03065 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.05374 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.82923 | 0.839 |
DC3000/delta hrp 6h | 1.05422 | 1 |
DC3000/delta hrp 12h | 0.98276 | 1 |
DC3000/delta hrp 24h | 1.24147 | 0.567 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.07921 | 0.648 |
DC3000 delta B/DC3000 delta AB | 1.09487 | 0.381 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.9739 | 1 |
Exp 36h | 0.84444 | 0.623 |
Exp 60h | 0.96459 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.94272 | 0.485 |
transgenic ySAMdc/azygous control (breaker) | 0.92673 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.93033 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95454 | 0.095 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.09488 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.13191 | 0.14 |
Manapal/WT (break) | 0.96662 | 1 |
Manapal/WT (red) | 0.91139 | 0.36 |
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