Expression of 1-1-1.1.6.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.5480.463
27DAP/17DAP1.243270.749
39DAP/27DAP1.225370.61
41DAP/39DAP1.247470.289
42DAP/41DAP1.091920.92
43DAP/42DAP1.047961
47DAP/43DAP1.164740.842
52DAP/47DAP1.380730.608
57DAP/52DAP0.905980.7

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.043620.735
17DAP/reference1.055310.399
27DAP/reference1.286310.258
39DAP/reference1.164610.197
41DAP/reference1.04480.171
42DAP/reference1.141470.137
43DAP/reference1.144450.024
47DAP/reference1.171760.119
52DAP/reference1.097490.607
57DAP/reference1.024640.845

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.108750.699
27DAP/17DAP1.211250.533
39DAP/27DAP0.976950.844
41DAP/39DAP1.094650.801
42DAP/41DAP0.902120.358
43DAP/42DAP1.114480.478
47DAP/43DAP1.031190.926
52DAP/47DAP0.82930.136
57DAP/52DAP1.390370.276
57DAP/7DAP1.395571

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.082570.638
17DAP/reference0.868320.049
27DAP/reference0.91080.117
39DAP/reference1.245850.107
41DAP/reference1.11120.445
42DAP/reference1.184150.308
43DAP/reference1.167150.325
47DAP/reference1.219760.37
52DAP/reference1.134170.491
57DAP/reference1.060160.612

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.02150.933
17DAP/reference1.073290.839
27DAP/reference1.422310.018
39DAP/reference1.298880.082
41DAP/reference0.94880.34
42DAP/reference1.168690.202
43DAP/reference1.40.154
47DAP/reference1.179040.04
52DAP/reference0.982240.537
57DAP/reference1.033710.93

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.876690.268
17DAP/reference1.102190.685
27DAP/reference0.842960.076
39DAP/reference1.076610.691
41DAP/reference1.176370.333
42DAP/reference1.112340.3
43DAP/reference1.122630.241
47DAP/reference1.049860.994
52DAP/reference0.957990.582
57DAP/reference1.090170.636

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.252190.966
26DAP/20DAP1.151620.7
34DAP/26DAP1.191011
51DAP/34DAP1.501170.077
52DAP/51DAP0.844730.151
53DAP/52DAP1.00621
55DAP/53DAP0.993030.876
57DAP/55DAP3.415210.906
62DAP/57DAPN/AN/A
68DAP/62DAP1.67253
68DAP/14DAP0.812130.035

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.141880.547

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.163120.176
Mature Green Tomato/Ripe Tomato1.488460.048
Immature Eggplant/Mature Eggplant0.911450.111
Ripe Pepper/Ripe Tomato0.496460.224
Mature Eggplant/Ripe Tomato1.044351

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.944961
12-2/M82N/AN/A
12-4/M820.973960.619
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M821.12211
4-3-2/M820.787840.698
4-3/M821.113021
5-3/M821.01797
6-2/M82N/AN/A
6-3/M820.97857
7-1/M821.202
7-2/M82N/AN/A
9-3-2/M821.06012

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.808310.247
IL2-6/WTpooled1.200510.46
IL7-5/WTpooled1.19388
IL7-3/WTpooled1.151621
IL12-4/WTpooled0.793980.566
IL1-4/WTpooled0.861080.834
WT/WTpooled0.961521

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.084360.309

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.089150.875
DC3000/delta hrp 6h0.905750.95
DC3000/delta hrp 12h1.080341
DC3000/delta hrp 24h1.813670.322

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.709080.042
DC3000 delta B/DC3000 delta AB1.092610.703

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.914211
Exp 36h0.951350.879
Exp 60h0.954420.855

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.032481
Var 0h0.88190.933
Var 12h I row2-row11.36370.211
Var 12h NI row2-row10.944130.82
Var 36h I row2-row10.904290.805
Var 36h NI row2-row11.067670.482
Var 60h I row2-row10.823720.285
Var 60h NI row2-row11.003411
Time course 0hI-0hNI0.969720.843
Time course 12hI-12hNI1.117190.216
Time course 36hI-36hNI1.269340.05
Time course 60hI-60hNI1.814740.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.928470.485
transgenic ySAMdc/azygous control (breaker)0.816330.125
transgenic ySAMdc/azygous control (red)0.899281

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.902990.05

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.623170.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.680890.172
Manapal/WT (break)0.964691
Manapal/WT (red)1.204520.413