Expression of 1-1-1.1.7.14

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.148950.452
27DAP/17DAP1.104770.859
39DAP/27DAP1.023211
41DAP/39DAP1.184510.67
42DAP/41DAP0.892470.774
43DAP/42DAP1.151430.636
47DAP/43DAP1.105020.689
52DAP/47DAP0.821740.526
57DAP/52DAP1.029871

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.166270.089
17DAP/reference1.004411
27DAP/reference1.125330.135
39DAP/reference1.010870.871
41DAP/reference1.341530.054
42DAP/reference1.171210.002
43DAP/reference0.952770.464
47DAP/reference1.161670.003
52DAP/reference1.220250.059
57DAP/reference1.019051

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.04361
27DAP/17DAP1.04659
39DAP/27DAP1.028050.659
41DAP/39DAP1.040920.748
42DAP/41DAP1.041470.783
43DAP/42DAP0.999661
47DAP/43DAP1.049810.812
52DAP/47DAP1.024960.945
57DAP/52DAP1.030630.899
57DAP/7DAPN/AN/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.965860.402
17DAP/reference0.947320.024
27DAP/reference0.925730.026
39DAP/reference0.970360.198
41DAP/reference1.021610.524
42DAP/reference1.0090.889
43DAP/reference0.981680.403
47DAP/reference1.02720.854
52DAP/reference0.931590.077
57DAP/reference0.965790.382

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.1030.384
17DAP/reference1.227660.023
27DAP/reference1.338980.073
39DAP/reference1.261550.097
41DAP/reference1.419860.005
42DAP/reference1.266110.037
43DAP/reference1.249620.105
47DAP/reference1.241030.008
52DAP/reference1.298340.006
57DAP/reference1.265460.057

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.954580.147
17DAP/reference1.066640.612
27DAP/reference1.028580.934
39DAP/reference1.03230.962
41DAP/reference0.961770.032
42DAP/reference1.194760.49
43DAP/reference1.177240.459
47DAP/reference1.256250.133
52DAP/reference0.968720.663
57DAP/reference1.058560.827

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.997951
26DAP/20DAP0.982151
34DAP/26DAP0.951920.741
51DAP/34DAP1.068820.654
52DAP/51DAP1.028880.77
53DAP/52DAPN/AN/A
55DAP/53DAP1.11266
57DAP/55DAP1.152080.424
62DAP/57DAPN/AN/A
68DAP/62DAP1.177590.124
68DAP/14DAP0.951551

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.932520.239

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.322980.287
Mature Green Tomato/Ripe Tomato1.075891
Immature Eggplant/Mature Eggplant0.94515
Ripe Pepper/Ripe Tomato1.63863
Mature Eggplant/Ripe Tomato1.887220.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.024351
1-1-2/M821.044851
12-2/M820.92168
12-4/M821.005771
1-3/M820.97822
2-1-1/M821.042240.764
2-1/M820.88953
2-6/M821.16108
3-2/M820.96547
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M820.6973
4-3/M820.983481
5-3/M821.028511
6-2/M821.03451
6-3/M820.972951
7-1/M82N/AN/A
7-2/M820.899120.57
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.76507
IL2-6/WTpooled1.065610.659
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.070421
IL12-4/WTpooled1.123970.785
IL1-4/WTpooled0.953410.834
WT/WTpooled0.931581

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.104640.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.95911
DC3000/delta hrp 6h1.12431
DC3000/delta hrp 12h1.118531
DC3000/delta hrp 24h0.980880.924

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.089520.076
DC3000 delta B/DC3000 delta AB1.054050.565

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.16641
Exp 36h0.597660.406
Exp 60h0.6910.259

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.94261
Var 0h1.020441
Var 12h I row2-row11.100970.296
Var 12h NI row2-row10.973670.906
Var 36h I row2-row11.072941
Var 36h NI row2-row11.007591
Var 60h I row2-row11.052321
Var 60h NI row2-row11.021691
Time course 0hI-0hNI1.080680.852
Time course 12hI-12hNI1.03040.785
Time course 36hI-36hNI0.952360.396
Time course 60hI-60hNI0.98110.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.014931
transgenic ySAMdc/azygous control (breaker)1.335520.248
transgenic ySAMdc/azygous control (red)1.121380.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.941660.081

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.113640.307
Manapal/WT (break)1.234020.381
Manapal/WT (red)0.860340.503