Expression of 1-1-1.1.7.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.14895 | 0.452 |
27DAP/17DAP | 1.10477 | 0.859 |
39DAP/27DAP | 1.02321 | 1 |
41DAP/39DAP | 1.18451 | 0.67 |
42DAP/41DAP | 0.89247 | 0.774 |
43DAP/42DAP | 1.15143 | 0.636 |
47DAP/43DAP | 1.10502 | 0.689 |
52DAP/47DAP | 0.82174 | 0.526 |
57DAP/52DAP | 1.02987 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16627 | 0.089 |
17DAP/reference | 1.00441 | 1 |
27DAP/reference | 1.12533 | 0.135 |
39DAP/reference | 1.01087 | 0.871 |
41DAP/reference | 1.34153 | 0.054 |
42DAP/reference | 1.17121 | 0.002 |
43DAP/reference | 0.95277 | 0.464 |
47DAP/reference | 1.16167 | 0.003 |
52DAP/reference | 1.22025 | 0.059 |
57DAP/reference | 1.01905 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04361 | |
27DAP/17DAP | 1.04659 | |
39DAP/27DAP | 1.02805 | 0.659 |
41DAP/39DAP | 1.04092 | 0.748 |
42DAP/41DAP | 1.04147 | 0.783 |
43DAP/42DAP | 0.99966 | 1 |
47DAP/43DAP | 1.04981 | 0.812 |
52DAP/47DAP | 1.02496 | 0.945 |
57DAP/52DAP | 1.03063 | 0.899 |
57DAP/7DAP | N/A | N/A |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96586 | 0.402 |
17DAP/reference | 0.94732 | 0.024 |
27DAP/reference | 0.92573 | 0.026 |
39DAP/reference | 0.97036 | 0.198 |
41DAP/reference | 1.02161 | 0.524 |
42DAP/reference | 1.009 | 0.889 |
43DAP/reference | 0.98168 | 0.403 |
47DAP/reference | 1.0272 | 0.854 |
52DAP/reference | 0.93159 | 0.077 |
57DAP/reference | 0.96579 | 0.382 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.103 | 0.384 |
17DAP/reference | 1.22766 | 0.023 |
27DAP/reference | 1.33898 | 0.073 |
39DAP/reference | 1.26155 | 0.097 |
41DAP/reference | 1.41986 | 0.005 |
42DAP/reference | 1.26611 | 0.037 |
43DAP/reference | 1.24962 | 0.105 |
47DAP/reference | 1.24103 | 0.008 |
52DAP/reference | 1.29834 | 0.006 |
57DAP/reference | 1.26546 | 0.057 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95458 | 0.147 |
17DAP/reference | 1.06664 | 0.612 |
27DAP/reference | 1.02858 | 0.934 |
39DAP/reference | 1.0323 | 0.962 |
41DAP/reference | 0.96177 | 0.032 |
42DAP/reference | 1.19476 | 0.49 |
43DAP/reference | 1.17724 | 0.459 |
47DAP/reference | 1.25625 | 0.133 |
52DAP/reference | 0.96872 | 0.663 |
57DAP/reference | 1.05856 | 0.827 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99795 | 1 |
26DAP/20DAP | 0.98215 | 1 |
34DAP/26DAP | 0.95192 | 0.741 |
51DAP/34DAP | 1.06882 | 0.654 |
52DAP/51DAP | 1.02888 | 0.77 |
53DAP/52DAP | N/A | N/A |
55DAP/53DAP | 1.11266 | |
57DAP/55DAP | 1.15208 | 0.424 |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | 1.17759 | 0.124 |
68DAP/14DAP | 0.95155 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.93252 | 0.239 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.32298 | 0.287 |
Mature Green Tomato/Ripe Tomato | 1.07589 | 1 |
Immature Eggplant/Mature Eggplant | 0.94515 | |
Ripe Pepper/Ripe Tomato | 1.63863 | |
Mature Eggplant/Ripe Tomato | 1.88722 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.02435 | 1 |
1-1-2/M82 | 1.04485 | 1 |
12-2/M82 | 0.92168 | |
12-4/M82 | 1.00577 | 1 |
1-3/M82 | 0.97822 | |
2-1-1/M82 | 1.04224 | 0.764 |
2-1/M82 | 0.88953 | |
2-6/M82 | 1.16108 | |
3-2/M82 | 0.96547 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.6973 | |
4-3/M82 | 0.98348 | 1 |
5-3/M82 | 1.02851 | 1 |
6-2/M82 | 1.03451 | |
6-3/M82 | 0.97295 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.89912 | 0.57 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.76507 | |
IL2-6/WTpooled | 1.06561 | 0.659 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.07042 | 1 |
IL12-4/WTpooled | 1.12397 | 0.785 |
IL1-4/WTpooled | 0.95341 | 0.834 |
WT/WTpooled | 0.93158 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.10464 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9591 | 1 |
DC3000/delta hrp 6h | 1.1243 | 1 |
DC3000/delta hrp 12h | 1.11853 | 1 |
DC3000/delta hrp 24h | 0.98088 | 0.924 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.08952 | 0.076 |
DC3000 delta B/DC3000 delta AB | 1.05405 | 0.565 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.1664 | 1 |
Exp 36h | 0.59766 | 0.406 |
Exp 60h | 0.691 | 0.259 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9426 | 1 |
Var 0h | 1.02044 | 1 |
Var 12h I row2-row1 | 1.10097 | 0.296 |
Var 12h NI row2-row1 | 0.97367 | 0.906 |
Var 36h I row2-row1 | 1.07294 | 1 |
Var 36h NI row2-row1 | 1.00759 | 1 |
Var 60h I row2-row1 | 1.05232 | 1 |
Var 60h NI row2-row1 | 1.02169 | 1 |
Time course 0hI-0hNI | 1.08068 | 0.852 |
Time course 12hI-12hNI | 1.0304 | 0.785 |
Time course 36hI-36hNI | 0.95236 | 0.396 |
Time course 60hI-60hNI | 0.9811 | 0.646 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.01493 | 1 |
transgenic ySAMdc/azygous control (breaker) | 1.33552 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.12138 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.94166 | 0.081 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.11364 | 0.307 |
Manapal/WT (break) | 1.23402 | 0.381 |
Manapal/WT (red) | 0.86034 | 0.503 |
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