Expression of 1-1-1.1.7.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04269 | 0.893 |
27DAP/17DAP | 1.16444 | 0.873 |
39DAP/27DAP | 1.05991 | 0.992 |
41DAP/39DAP | 0.96771 | 0.868 |
42DAP/41DAP | 0.90201 | 1 |
43DAP/42DAP | 1.02088 | 1 |
47DAP/43DAP | 1.27192 | 0.746 |
52DAP/47DAP | 0.66249 | 0.174 |
57DAP/52DAP | 0.96415 | 0.957 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.19293 | 0.045 |
17DAP/reference | 0.81984 | 0.012 |
27DAP/reference | 0.81726 | 0.106 |
39DAP/reference | 0.76637 | 0.02 |
41DAP/reference | 0.78265 | 0.021 |
42DAP/reference | 1.0648 | 0.706 |
43DAP/reference | 0.86964 | 0.063 |
47DAP/reference | 1.03704 | 0.728 |
52DAP/reference | 1.0151 | 0.654 |
57DAP/reference | 1.08557 | 0.332 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.13652 | 0.305 |
27DAP/17DAP | 0.9831 | 0.919 |
39DAP/27DAP | 0.90383 | 0.316 |
41DAP/39DAP | 1.10904 | 0.773 |
42DAP/41DAP | 0.96031 | 0.695 |
43DAP/42DAP | 0.86119 | 0.165 |
47DAP/43DAP | 1.07062 | 0.857 |
52DAP/47DAP | 0.88387 | 0.188 |
57DAP/52DAP | 1.00612 | 0.875 |
57DAP/7DAP | 0.4418 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07261 | 1 |
17DAP/reference | 1.07263 | 0.627 |
27DAP/reference | 1.22558 | 0.453 |
39DAP/reference | 1.20915 | 0.09 |
41DAP/reference | 1.02698 | 0.848 |
42DAP/reference | 0.99292 | 0.641 |
43DAP/reference | 1.00421 | 1 |
47DAP/reference | 1.04421 | 0.822 |
52DAP/reference | 1.01704 | 1 |
57DAP/reference | 1.10714 | 0.268 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10775 | 0.35 |
17DAP/reference | 1.35744 | 0.011 |
27DAP/reference | 1.40024 | 0.06 |
39DAP/reference | 1.08741 | 1 |
41DAP/reference | 1.19369 | 0.548 |
42DAP/reference | 0.93568 | 0.392 |
43DAP/reference | 0.74619 | 0.277 |
47DAP/reference | 0.88414 | 0.159 |
52DAP/reference | 0.76193 | 0.01 |
57DAP/reference | 0.84836 | 0.144 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15972 | 0.218 |
17DAP/reference | 1.29052 | 0.071 |
27DAP/reference | 0.96647 | 0.516 |
39DAP/reference | 1.03738 | 0.733 |
41DAP/reference | 1.00634 | 0.826 |
42DAP/reference | 1.02538 | 1 |
43DAP/reference | 1.06857 | 0.79 |
47DAP/reference | 0.78935 | 0.008 |
52DAP/reference | 0.98268 | 0.781 |
57DAP/reference | 1.11403 | 0.648 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.6987 | 0.101 |
26DAP/20DAP | 1.70336 | 0.099 |
34DAP/26DAP | 1.13029 | 0.819 |
51DAP/34DAP | 0.86685 | 0.385 |
52DAP/51DAP | 1.09071 | 0.704 |
53DAP/52DAP | 0.66567 | 0.05 |
55DAP/53DAP | 0.54352 | 0.02 |
57DAP/55DAP | 1.55809 | 0.231 |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | 0.79584 | |
68DAP/14DAP | 1.57868 | 0.785 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.35981 | 0.052 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.08162 | 0.417 |
Mature Green Tomato/Ripe Tomato | 1.00769 | |
Immature Eggplant/Mature Eggplant | 0.95351 | 0.72 |
Ripe Pepper/Ripe Tomato | 1.22829 | 1 |
Mature Eggplant/Ripe Tomato | 2.01151 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.92591 | 0.944 |
1-1-2/M82 | 1.05694 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.21402 | 1 |
1-3/M82 | 1.84434 | 0.479 |
2-1-1/M82 | 1.64651 | 0.764 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.02478 | |
3-2/M82 | 1.09922 | |
4-1-1/M82 | 0.80821 | |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.01419 | 1 |
4-3/M82 | 0.99998 | 1 |
5-3/M82 | 1.17659 | |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.86069 | 1 |
7-1/M82 | 1.05875 | 1 |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.21795 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.96982 | 1 |
IL2-6/WTpooled | 1.09564 | 0.584 |
IL7-5/WTpooled | 1.92153 | 1 |
IL7-3/WTpooled | 1.15929 | 1 |
IL12-4/WTpooled | 0.87126 | 1 |
IL1-4/WTpooled | 1.32473 | 1 |
WT/WTpooled | 0.89027 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.12587 | 0.309 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.93929 | 1 |
DC3000/delta hrp 6h | 1.04008 | 1 |
DC3000/delta hrp 12h | 1.46098 | 1 |
DC3000/delta hrp 24h | 0.69102 | 0.034 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.2925 | 0.515 |
DC3000 delta B/DC3000 delta AB | 1.17673 | 0.249 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.91473 | 1 |
Exp 36h | 0.77017 | 0.589 |
Exp 60h | 0.62092 | 0.259 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.8716 | 1 |
Var 0h | 1.2905 | 0.274 |
Var 12h I row2-row1 | 0.9198 | 0.856 |
Var 12h NI row2-row1 | 1.25891 | 0.649 |
Var 36h I row2-row1 | 1.1434 | 0.601 |
Var 36h NI row2-row1 | 0.89066 | 0.645 |
Var 60h I row2-row1 | 0.99734 | 1 |
Var 60h NI row2-row1 | 0.80143 | 0.306 |
Time course 0hI-0hNI | 0.82361 | 0.121 |
Time course 12hI-12hNI | 1.02123 | 0.827 |
Time course 36hI-36hNI | 1.17282 | 0.28 |
Time course 60hI-60hNI | 1.17796 | 0.16 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.13082 | 0.305 |
transgenic ySAMdc/azygous control (breaker) | 1.71018 | 0.178 |
transgenic ySAMdc/azygous control (red) | 1.115 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.90452 | 0.371 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.72675 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.10316 | 0.14 |
Manapal/WT (break) | 1.49936 | 0.183 |
Manapal/WT (red) | 2.8465 | 0.142 |
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