Expression of 1-1-1.1.7.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.12234 | 0.681 |
27DAP/17DAP | 1.00769 | 1 |
39DAP/27DAP | 1.01862 | 0.857 |
41DAP/39DAP | 1.11248 | 0.708 |
42DAP/41DAP | 1.06121 | 0.898 |
43DAP/42DAP | 1.01598 | 1 |
47DAP/43DAP | 0.90679 | 0.64 |
52DAP/47DAP | 1.43843 | 0.463 |
57DAP/52DAP | 1.09842 | 0.894 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01441 | 1 |
17DAP/reference | 0.8394 | 0.053 |
27DAP/reference | 1.03989 | 0.794 |
39DAP/reference | 0.94839 | 0.487 |
41DAP/reference | 0.96626 | 0.542 |
42DAP/reference | 1.05338 | 0.812 |
43DAP/reference | 0.89566 | 0.071 |
47DAP/reference | 1.11284 | 0.379 |
52DAP/reference | 1.16247 | 0.229 |
57DAP/reference | 1.0984 | 0.366 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.28553 | 0.161 |
27DAP/17DAP | 1.15691 | 0.699 |
39DAP/27DAP | 0.98656 | 0.908 |
41DAP/39DAP | 1.1408 | 1 |
42DAP/41DAP | 1.18363 | 0.55 |
43DAP/42DAP | 0.85435 | 0.165 |
47DAP/43DAP | 1.07781 | 0.889 |
52DAP/47DAP | 1.12052 | 0.696 |
57DAP/52DAP | 1.32084 | 0.159 |
57DAP/7DAP | 0.97567 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20443 | 0.079 |
17DAP/reference | 0.90101 | 0.094 |
27DAP/reference | 1.03328 | 1 |
39DAP/reference | 1.03409 | 0.96 |
41DAP/reference | 0.97516 | 0.469 |
42DAP/reference | 0.888 | 0.136 |
43DAP/reference | 0.979 | 0.502 |
47DAP/reference | 1.13322 | 0.48 |
52DAP/reference | 1.09569 | 0.428 |
57DAP/reference | 1.0379 | 0.831 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12151 | 0.724 |
17DAP/reference | 1.23559 | 0.026 |
27DAP/reference | 1.08914 | 0.988 |
39DAP/reference | 0.9132 | 0.019 |
41DAP/reference | 0.99716 | 0.666 |
42DAP/reference | 1.19433 | 0.108 |
43DAP/reference | 0.97434 | 0.67 |
47DAP/reference | 1.18396 | 0.048 |
52DAP/reference | 0.67686 | 0.01 |
57DAP/reference | 0.93284 | 0.408 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9331 | 0.391 |
17DAP/reference | 0.97011 | 0.696 |
27DAP/reference | 1.08808 | 0.531 |
39DAP/reference | 1.05182 | 0.935 |
41DAP/reference | 0.85398 | 0.209 |
42DAP/reference | 1.24587 | 0.072 |
43DAP/reference | 0.89811 | 0.246 |
47DAP/reference | 0.89484 | 0.08 |
52DAP/reference | 1.09156 | 0.566 |
57DAP/reference | 1.18746 | 0.075 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.54248 | 0.966 |
26DAP/20DAP | 1.7621 | 0.192 |
34DAP/26DAP | 0.91304 | 0.777 |
51DAP/34DAP | 1.81344 | 0.032 |
52DAP/51DAP | 0.98388 | 1 |
53DAP/52DAP | 1.36627 | 0.261 |
55DAP/53DAP | 0.75032 | 0.149 |
57DAP/55DAP | 0.62458 | 0.087 |
62DAP/57DAP | 0.59761 | |
68DAP/62DAP | 1.29276 | |
68DAP/14DAP | 0.90928 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.11439 | 0.74 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.60807 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.72808 | 0.036 |
Immature Eggplant/Mature Eggplant | 0.82555 | 0.223 |
Ripe Pepper/Ripe Tomato | 0.3457 | 0.293 |
Mature Eggplant/Ripe Tomato | 1.03496 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.96151 | 0.961 |
1-1-2/M82 | 1.13298 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.4201 | 0.694 |
1-3/M82 | 0.39945 | |
2-1-1/M82 | 0.71554 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.68133 | |
3-2/M82 | 0.75766 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.07773 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.88562 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.05056 | |
7-1/M82 | 0.96755 | |
7-2/M82 | 0.47348 | |
9-3-2/M82 | 0.96671 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.10731 | 1 |
IL2-6/WTpooled | 0.70084 | 0.383 |
IL7-5/WTpooled | 1.10082 | 0.792 |
IL7-3/WTpooled | 1.33471 | 1 |
IL12-4/WTpooled | 0.89662 | 0.71 |
IL1-4/WTpooled | 0.87633 | 0.699 |
WT/WTpooled | 0.90609 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.07039 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04395 | 0.921 |
DC3000/delta hrp 6h | 0.92354 | 0.95 |
DC3000/delta hrp 12h | 1.03115 | 1 |
DC3000/delta hrp 24h | 1.51162 | 0.69 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.34131 | 0.043 |
DC3000 delta B/DC3000 delta AB | 1.36109 | 0.118 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.97768 | 1 |
Exp 36h | 0.68793 | 0.449 |
Exp 60h | 0.74129 | 0.259 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.04967 | 1 |
Var 0h | 1.53058 | 0.782 |
Var 12h I row2-row1 | 1.48266 | 0.473 |
Var 12h NI row2-row1 | 1.1975 | 0.649 |
Var 36h I row2-row1 | 1.08511 | 0.908 |
Var 36h NI row2-row1 | 1.03889 | 1 |
Var 60h I row2-row1 | 0.72685 | 0.285 |
Var 60h NI row2-row1 | 1.15549 | 0.904 |
Time course 0hI-0hNI | 1.01235 | 1 |
Time course 12hI-12hNI | 1.17473 | 0.227 |
Time course 36hI-36hNI | 1.22892 | 0.218 |
Time course 60hI-60hNI | 2.10597 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.95387 | 0.567 |
transgenic ySAMdc/azygous control (breaker) | 0.47885 | 0.142 |
transgenic ySAMdc/azygous control (red) | 0.91802 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95189 | 0.065 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.44304 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.6048 | 0.172 |
Manapal/WT (break) | 1.09969 | 1 |
Manapal/WT (red) | 0.4705 | 0.181 |
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