Expression of 1-1-1.1.7.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.122340.681
27DAP/17DAP1.007691
39DAP/27DAP1.018620.857
41DAP/39DAP1.112480.708
42DAP/41DAP1.061210.898
43DAP/42DAP1.015981
47DAP/43DAP0.906790.64
52DAP/47DAP1.438430.463
57DAP/52DAP1.098420.894

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.014411
17DAP/reference0.83940.053
27DAP/reference1.039890.794
39DAP/reference0.948390.487
41DAP/reference0.966260.542
42DAP/reference1.053380.812
43DAP/reference0.895660.071
47DAP/reference1.112840.379
52DAP/reference1.162470.229
57DAP/reference1.09840.366

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.285530.161
27DAP/17DAP1.156910.699
39DAP/27DAP0.986560.908
41DAP/39DAP1.14081
42DAP/41DAP1.183630.55
43DAP/42DAP0.854350.165
47DAP/43DAP1.077810.889
52DAP/47DAP1.120520.696
57DAP/52DAP1.320840.159
57DAP/7DAP0.975671

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.204430.079
17DAP/reference0.901010.094
27DAP/reference1.033281
39DAP/reference1.034090.96
41DAP/reference0.975160.469
42DAP/reference0.8880.136
43DAP/reference0.9790.502
47DAP/reference1.133220.48
52DAP/reference1.095690.428
57DAP/reference1.03790.831

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.121510.724
17DAP/reference1.235590.026
27DAP/reference1.089140.988
39DAP/reference0.91320.019
41DAP/reference0.997160.666
42DAP/reference1.194330.108
43DAP/reference0.974340.67
47DAP/reference1.183960.048
52DAP/reference0.676860.01
57DAP/reference0.932840.408

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.93310.391
17DAP/reference0.970110.696
27DAP/reference1.088080.531
39DAP/reference1.051820.935
41DAP/reference0.853980.209
42DAP/reference1.245870.072
43DAP/reference0.898110.246
47DAP/reference0.894840.08
52DAP/reference1.091560.566
57DAP/reference1.187460.075

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.542480.966
26DAP/20DAP1.76210.192
34DAP/26DAP0.913040.777
51DAP/34DAP1.813440.032
52DAP/51DAP0.983881
53DAP/52DAP1.366270.261
55DAP/53DAP0.750320.149
57DAP/55DAP0.624580.087
62DAP/57DAP0.59761
68DAP/62DAP1.29276
68DAP/14DAP0.90928

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.114390.74

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.608070.058
Mature Green Tomato/Ripe Tomato1.728080.036
Immature Eggplant/Mature Eggplant0.825550.223
Ripe Pepper/Ripe Tomato0.34570.293
Mature Eggplant/Ripe Tomato1.034961

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.961510.961
1-1-2/M821.132981
12-2/M82N/AN/A
12-4/M821.42010.694
1-3/M820.39945
2-1-1/M820.71554
2-1/M82N/AN/A
2-6/M820.68133
3-2/M820.75766
4-1-1/M82N/AN/A
4-1/M821.07773
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M820.885621
6-2/M82N/AN/A
6-3/M821.05056
7-1/M820.96755
7-2/M820.47348
9-3-2/M820.966711

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.107311
IL2-6/WTpooled0.700840.383
IL7-5/WTpooled1.100820.792
IL7-3/WTpooled1.334711
IL12-4/WTpooled0.896620.71
IL1-4/WTpooled0.876330.699
WT/WTpooled0.906091

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.070390.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.043950.921
DC3000/delta hrp 6h0.923540.95
DC3000/delta hrp 12h1.031151
DC3000/delta hrp 24h1.511620.69

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.341310.043
DC3000 delta B/DC3000 delta AB1.361090.118

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.977681
Exp 36h0.687930.449
Exp 60h0.741290.259

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.049671
Var 0h1.530580.782
Var 12h I row2-row11.482660.473
Var 12h NI row2-row11.19750.649
Var 36h I row2-row11.085110.908
Var 36h NI row2-row11.038891
Var 60h I row2-row10.726850.285
Var 60h NI row2-row11.155490.904
Time course 0hI-0hNI1.012351
Time course 12hI-12hNI1.174730.227
Time course 36hI-36hNI1.228920.218
Time course 60hI-60hNI2.105970.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.953870.567
transgenic ySAMdc/azygous control (breaker)0.478850.142
transgenic ySAMdc/azygous control (red)0.918021

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.951890.065

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.443040.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.60480.172
Manapal/WT (break)1.099691
Manapal/WT (red)0.47050.181