Expression of 1-1-1.1.8.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.34221 | 0.477 |
27DAP/17DAP | 0.97977 | 1 |
39DAP/27DAP | 0.86172 | 0.462 |
41DAP/39DAP | 1.6143 | 0.328 |
42DAP/41DAP | 1.14328 | 0.82 |
43DAP/42DAP | 1.41719 | 0.14 |
47DAP/43DAP | 1.61971 | 0.369 |
52DAP/47DAP | 1.1816 | 0.709 |
57DAP/52DAP | 0.97565 | 0.957 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97024 | 0.513 |
17DAP/reference | 1.08739 | 0.039 |
27DAP/reference | 0.94777 | 0.265 |
39DAP/reference | 1.03768 | 0.593 |
41DAP/reference | 1.015 | 0.963 |
42DAP/reference | 0.93334 | 0.062 |
43DAP/reference | 0.98366 | 0.763 |
47DAP/reference | 0.91282 | 0.042 |
52DAP/reference | 0.85297 | 0.135 |
57DAP/reference | 0.85838 | 0.101 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08144 | 0.326 |
27DAP/17DAP | 1.14206 | 0.706 |
39DAP/27DAP | 1.82635 | 0.046 |
41DAP/39DAP | 0.46084 | 0.013 |
42DAP/41DAP | 3.9103 | 0.002 |
43DAP/42DAP | 3.69317 | 0.013 |
47DAP/43DAP | 0.92911 | 0.722 |
52DAP/47DAP | 1.01557 | 0.935 |
57DAP/52DAP | 1.07408 | 1 |
57DAP/7DAP | 4.66812 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.71861 | 0.078 |
17DAP/reference | 0.69568 | 0.013 |
27DAP/reference | 0.9518 | 0.325 |
39DAP/reference | 1.35952 | 0.01 |
41DAP/reference | 1.15838 | 0.241 |
42DAP/reference | 1.27129 | 0.016 |
43DAP/reference | 1.16987 | 0.066 |
47DAP/reference | 1.249 | 0.413 |
52DAP/reference | 0.89907 | 0.213 |
57DAP/reference | 0.79938 | 0.047 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92376 | 0.197 |
17DAP/reference | 0.92127 | 0.07 |
27DAP/reference | 0.9715 | 0.519 |
39DAP/reference | 1.00175 | 0.745 |
41DAP/reference | 0.82985 | 0.019 |
42DAP/reference | 1.09285 | 0.351 |
43DAP/reference | 1.2918 | 0.562 |
47DAP/reference | 1.05781 | 0.544 |
52DAP/reference | 0.96022 | 0.239 |
57DAP/reference | 0.93616 | 0.318 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.76885 | 0.077 |
17DAP/reference | 0.81101 | 0.3 |
27DAP/reference | 0.70919 | 0.069 |
39DAP/reference | 0.85601 | 0.05 |
41DAP/reference | 0.80689 | 0.02 |
42DAP/reference | 1.55679 | 0.045 |
43DAP/reference | 1.2674 | 0.202 |
47DAP/reference | 0.97084 | 0.509 |
52DAP/reference | 1.21029 | 0.278 |
57DAP/reference | 1.07341 | 1 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00772 | 1 |
26DAP/20DAP | 0.77834 | 0.244 |
34DAP/26DAP | 1.08176 | 1 |
51DAP/34DAP | 1.30455 | 0.105 |
52DAP/51DAP | 1.19048 | 0.121 |
53DAP/52DAP | 3.73335 | 0.043 |
55DAP/53DAP | 0.97926 | 0.864 |
57DAP/55DAP | 0.76879 | 0.09 |
62DAP/57DAP | 0.77154 | 0.28 |
68DAP/62DAP | 1.33355 | 0.413 |
68DAP/14DAP | 1.05381 | 0.656 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.74284 | 0.021 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.23727 | 0.176 |
Mature Green Tomato/Ripe Tomato | 0.29893 | 0.019 |
Immature Eggplant/Mature Eggplant | 0.34502 | 0.062 |
Ripe Pepper/Ripe Tomato | 0.97129 | 1 |
Mature Eggplant/Ripe Tomato | 1.94842 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.90938 | 0.944 |
1-1-2/M82 | 1.11878 | 1 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.923 | 0.619 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | 0.49675 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.43621 | |
3-2/M82 | 0.17823 | 0.455 |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.48526 | |
4-3-2/M82 | 0.63856 | |
4-3/M82 | 1.33105 | 0.268 |
5-3/M82 | 1.02433 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.94592 | |
7-1/M82 | 1.09644 | |
7-2/M82 | 1.07328 | 1 |
9-3-2/M82 | 1.70686 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.12325 | 0.493 |
IL2-6/WTpooled | 0.70071 | |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.4121 | |
IL12-4/WTpooled | 0.82048 | 0.71 |
IL1-4/WTpooled | 1.11925 | 1 |
WT/WTpooled | 0.97137 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.76328 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.86509 | 0.288 |
DC3000/delta hrp 6h | 0.94856 | 0.95 |
DC3000/delta hrp 12h | 1.1697 | 1 |
DC3000/delta hrp 24h | 2.0242 | 0.453 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.53319 | 0.229 |
DC3000 delta B/DC3000 delta AB | 1.36902 | 0.167 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.05275 | 1 |
Exp 36h | 1.20776 | 1 |
Exp 60h | 1.16602 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05656 | 1 |
Var 0h | 1.0027 | 1 |
Var 12h I row2-row1 | 1.59942 | 0.216 |
Var 12h NI row2-row1 | 0.90786 | 0.82 |
Var 36h I row2-row1 | 0.9848 | 1 |
Var 36h NI row2-row1 | 0.89125 | 0.706 |
Var 60h I row2-row1 | 0.82521 | 0.285 |
Var 60h NI row2-row1 | 1.10594 | 0.904 |
Time course 0hI-0hNI | 0.97455 | 0.898 |
Time course 12hI-12hNI | 0.83379 | 0.142 |
Time course 36hI-36hNI | 0.98721 | 0.559 |
Time course 60hI-60hNI | 1.64983 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.91941 | 0.33 |
transgenic ySAMdc/azygous control (breaker) | 0.97052 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.9485 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99588 | 0.806 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.76729 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.58963 | 0.172 |
Manapal/WT (break) | 1.16753 | 1 |
Manapal/WT (red) | 1.13415 | 0.413 |
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