Expression of 1-1-1.1.8.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.342210.477
27DAP/17DAP0.979771
39DAP/27DAP0.861720.462
41DAP/39DAP1.61430.328
42DAP/41DAP1.143280.82
43DAP/42DAP1.417190.14
47DAP/43DAP1.619710.369
52DAP/47DAP1.18160.709
57DAP/52DAP0.975650.957

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.970240.513
17DAP/reference1.087390.039
27DAP/reference0.947770.265
39DAP/reference1.037680.593
41DAP/reference1.0150.963
42DAP/reference0.933340.062
43DAP/reference0.983660.763
47DAP/reference0.912820.042
52DAP/reference0.852970.135
57DAP/reference0.858380.101

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.081440.326
27DAP/17DAP1.142060.706
39DAP/27DAP1.826350.046
41DAP/39DAP0.460840.013
42DAP/41DAP3.91030.002
43DAP/42DAP3.693170.013
47DAP/43DAP0.929110.722
52DAP/47DAP1.015570.935
57DAP/52DAP1.074081
57DAP/7DAP4.66812

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.718610.078
17DAP/reference0.695680.013
27DAP/reference0.95180.325
39DAP/reference1.359520.01
41DAP/reference1.158380.241
42DAP/reference1.271290.016
43DAP/reference1.169870.066
47DAP/reference1.2490.413
52DAP/reference0.899070.213
57DAP/reference0.799380.047

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.923760.197
17DAP/reference0.921270.07
27DAP/reference0.97150.519
39DAP/reference1.001750.745
41DAP/reference0.829850.019
42DAP/reference1.092850.351
43DAP/reference1.29180.562
47DAP/reference1.057810.544
52DAP/reference0.960220.239
57DAP/reference0.936160.318

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.768850.077
17DAP/reference0.811010.3
27DAP/reference0.709190.069
39DAP/reference0.856010.05
41DAP/reference0.806890.02
42DAP/reference1.556790.045
43DAP/reference1.26740.202
47DAP/reference0.970840.509
52DAP/reference1.210290.278
57DAP/reference1.073411

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.007721
26DAP/20DAP0.778340.244
34DAP/26DAP1.081761
51DAP/34DAP1.304550.105
52DAP/51DAP1.190480.121
53DAP/52DAP3.733350.043
55DAP/53DAP0.979260.864
57DAP/55DAP0.768790.09
62DAP/57DAP0.771540.28
68DAP/62DAP1.333550.413
68DAP/14DAP1.053810.656

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.742840.021

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.237270.176
Mature Green Tomato/Ripe Tomato0.298930.019
Immature Eggplant/Mature Eggplant0.345020.062
Ripe Pepper/Ripe Tomato0.971291
Mature Eggplant/Ripe Tomato1.948420.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.909380.944
1-1-2/M821.118781
12-2/M82N/AN/A
12-4/M820.9230.619
1-3/M82N/AN/A
2-1-1/M820.49675
2-1/M82N/AN/A
2-6/M821.43621
3-2/M820.178230.455
4-1-1/M82N/AN/A
4-1/M821.48526
4-3-2/M820.63856
4-3/M821.331050.268
5-3/M821.024331
6-2/M82N/AN/A
6-3/M820.94592
7-1/M821.09644
7-2/M821.073281
9-3-2/M821.706861

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.123250.493
IL2-6/WTpooled0.70071
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.4121
IL12-4/WTpooled0.820480.71
IL1-4/WTpooled1.119251
WT/WTpooled0.971371

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.763280.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.865090.288
DC3000/delta hrp 6h0.948560.95
DC3000/delta hrp 12h1.16971
DC3000/delta hrp 24h2.02420.453

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.533190.229
DC3000 delta B/DC3000 delta AB1.369020.167

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.052751
Exp 36h1.207761
Exp 60h1.166020.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.056561
Var 0h1.00271
Var 12h I row2-row11.599420.216
Var 12h NI row2-row10.907860.82
Var 36h I row2-row10.98481
Var 36h NI row2-row10.891250.706
Var 60h I row2-row10.825210.285
Var 60h NI row2-row11.105940.904
Time course 0hI-0hNI0.974550.898
Time course 12hI-12hNI0.833790.142
Time course 36hI-36hNI0.987210.559
Time course 60hI-60hNI1.649830.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.919410.33
transgenic ySAMdc/azygous control (breaker)0.970520.49
transgenic ySAMdc/azygous control (red)0.94851

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.995880.806

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.767290.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.589630.172
Manapal/WT (break)1.167531
Manapal/WT (red)1.134150.413