Expression of 1-1-1.1.8.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.13157 | 0.904 |
27DAP/17DAP | 0.94058 | 0.899 |
39DAP/27DAP | 0.85549 | 0.458 |
41DAP/39DAP | 1.53318 | 0.372 |
42DAP/41DAP | 1.2754 | 0.871 |
43DAP/42DAP | 0.85331 | 0.709 |
47DAP/43DAP | 0.9121 | 0.618 |
52DAP/47DAP | 1.64419 | 0.52 |
57DAP/52DAP | 0.77422 | 0.687 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91053 | 0.132 |
17DAP/reference | 1.01959 | 0.355 |
27DAP/reference | 0.91865 | 0.065 |
39DAP/reference | 0.9479 | 0.35 |
41DAP/reference | 1.15539 | 0.054 |
42DAP/reference | 0.97396 | 0.25 |
43DAP/reference | 1.0524 | 0.445 |
47DAP/reference | 0.96281 | 0.191 |
52DAP/reference | 0.90312 | 0.135 |
57DAP/reference | 0.82258 | 0.012 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10275 | 0.114 |
27DAP/17DAP | 1.01177 | 0.969 |
39DAP/27DAP | 0.89445 | 0.156 |
41DAP/39DAP | 0.9727 | 0.959 |
42DAP/41DAP | 1.12794 | 0.436 |
43DAP/42DAP | 1.08679 | 0.513 |
47DAP/43DAP | 0.93727 | 0.402 |
52DAP/47DAP | 1.06059 | 0.835 |
57DAP/52DAP | 1.0754 | 0.895 |
57DAP/7DAP | 0.55887 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81302 | 0.071 |
17DAP/reference | 0.87214 | 0.028 |
27DAP/reference | 0.83324 | 0.01 |
39DAP/reference | 0.80641 | 0.012 |
41DAP/reference | 0.75661 | 0.02 |
42DAP/reference | 0.8077 | 0.016 |
43DAP/reference | 0.8122 | 0.032 |
47DAP/reference | 0.86297 | 0.293 |
52DAP/reference | 0.74884 | 0.012 |
57DAP/reference | 0.77913 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05601 | 0.704 |
17DAP/reference | 1.0271 | 0.739 |
27DAP/reference | 0.92967 | 0.438 |
39DAP/reference | 0.88602 | 0.029 |
41DAP/reference | 0.99728 | 0.735 |
42DAP/reference | 0.94676 | 0.189 |
43DAP/reference | 1.5128 | 0.009 |
47DAP/reference | 1.00524 | 1 |
52DAP/reference | 1.03071 | 0.667 |
57DAP/reference | 1.29523 | 0.104 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84549 | 0.046 |
17DAP/reference | 0.93726 | 0.281 |
27DAP/reference | 0.81871 | 0.047 |
39DAP/reference | 0.85792 | 0.133 |
41DAP/reference | 0.93468 | 0.371 |
42DAP/reference | 0.87588 | 0.134 |
43DAP/reference | 0.88195 | 0.042 |
47DAP/reference | 0.98102 | 0.538 |
52DAP/reference | 0.88451 | 0.232 |
57DAP/reference | 0.7718 | 0.026 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.95127 | 1 |
26DAP/20DAP | 0.83557 | 0.317 |
34DAP/26DAP | 1.03766 | 1 |
51DAP/34DAP | 0.92978 | 0.674 |
52DAP/51DAP | 1.29394 | 0.058 |
53DAP/52DAP | 0.91823 | 0.649 |
55DAP/53DAP | 1.33712 | 0.071 |
57DAP/55DAP | 0.92882 | 0.677 |
62DAP/57DAP | 1.06384 | 0.35 |
68DAP/62DAP | 0.68953 | |
68DAP/14DAP | 0.72053 | 0.086 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.70837 | 0.041 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.88475 | 0.21 |
Mature Green Tomato/Ripe Tomato | 0.67336 | 0.02 |
Immature Eggplant/Mature Eggplant | 4.49632 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.29436 | 1 |
Mature Eggplant/Ripe Tomato | 1.09941 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.06053 | 0.877 |
1-1-2/M82 | 0.95454 | 1 |
12-2/M82 | 1.11463 | 1 |
12-4/M82 | 0.90321 | 1 |
1-3/M82 | 0.90909 | 0.441 |
2-1-1/M82 | 0.97448 | 1 |
2-1/M82 | 0.6883 | |
2-6/M82 | 0.9875 | 1 |
3-2/M82 | 0.97093 | |
4-1-1/M82 | 0.89432 | 1 |
4-1/M82 | 1.15965 | 0.512 |
4-3-2/M82 | 0.9366 | 1 |
4-3/M82 | 0.91403 | 1 |
5-3/M82 | 0.97387 | 1 |
6-2/M82 | 0.931 | 1 |
6-3/M82 | 0.98044 | 1 |
7-1/M82 | 0.97083 | 1 |
7-2/M82 | 1.00769 | 1 |
9-3-2/M82 | 0.71118 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.20782 | 0.365 |
IL2-6/WTpooled | 1.05804 | 0.788 |
IL7-5/WTpooled | 0.45242 | |
IL7-3/WTpooled | 1.01634 | 1 |
IL12-4/WTpooled | 0.84762 | 0.581 |
IL1-4/WTpooled | 1.08391 | 1 |
WT/WTpooled | 0.90441 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.99185 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.08878 | 0.846 |
DC3000/delta hrp 6h | 1.26526 | 0.857 |
DC3000/delta hrp 12h | 1.25434 | 1 |
DC3000/delta hrp 24h | 1.0004 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.87879 | 0.141 |
DC3000 delta B/DC3000 delta AB | 0.98832 | 0.983 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.86385 | 1 |
Exp 36h | 0.8318 | 0.661 |
Exp 60h | 0.81481 | 0.251 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96805 | 1 |
Var 0h | 1.20883 | 0.782 |
Var 12h I row2-row1 | 0.84666 | 0.316 |
Var 12h NI row2-row1 | 0.9545 | 0.82 |
Var 36h I row2-row1 | 0.96813 | 1 |
Var 36h NI row2-row1 | 1.14048 | 1 |
Var 60h I row2-row1 | 1.16806 | 1 |
Var 60h NI row2-row1 | 1.03268 | 0.904 |
Time course 0hI-0hNI | 0.92445 | 0.376 |
Time course 12hI-12hNI | 0.97625 | 0.795 |
Time course 36hI-36hNI | 0.87434 | 0.023 |
Time course 60hI-60hNI | 0.43407 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.95614 | 0.571 |
transgenic ySAMdc/azygous control (breaker) | 1.0734 | 1 |
transgenic ySAMdc/azygous control (red) | 1.35791 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03632 | 0.092 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.66041 | 0.229 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 1.81285 | 0.13 |
Manapal/WT (red) | 1.3545 | 0.222 |
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