Expression of 1-1-1.1.8.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.1437 | 0.561 |
27DAP/17DAP | 1.08224 | 0.88 |
39DAP/27DAP | 0.82952 | 0.447 |
41DAP/39DAP | 1.2141 | 0.54 |
42DAP/41DAP | 1.07535 | 0.908 |
43DAP/42DAP | 0.94651 | 0.877 |
47DAP/43DAP | 1.25656 | 0.481 |
52DAP/47DAP | 1.20331 | 0.61 |
57DAP/52DAP | 1.04978 | 0.993 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99517 | 0.743 |
17DAP/reference | 1.09071 | 0.034 |
27DAP/reference | 1.05064 | 0.569 |
39DAP/reference | 1.01849 | 0.76 |
41DAP/reference | 1.14708 | 0.025 |
42DAP/reference | 0.95664 | 0.016 |
43DAP/reference | 0.98414 | 0.728 |
47DAP/reference | 1.00343 | 0.764 |
52DAP/reference | 0.98449 | 0.564 |
57DAP/reference | 1.01727 | 0.829 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.8976 | 0.496 |
27DAP/17DAP | 1.04077 | 0.969 |
39DAP/27DAP | 1.0704 | 0.643 |
41DAP/39DAP | 0.98162 | 0.997 |
42DAP/41DAP | 1.07168 | 0.852 |
43DAP/42DAP | 0.93499 | 0.482 |
47DAP/43DAP | 1.02706 | 0.963 |
52DAP/47DAP | 1.13896 | 0.593 |
57DAP/52DAP | 1.01022 | 1 |
57DAP/7DAP | 1.20746 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92905 | 0.296 |
17DAP/reference | 1.04288 | 0.896 |
27DAP/reference | 1.17701 | 0.014 |
39DAP/reference | 1.2353 | 0.333 |
41DAP/reference | 1.1484 | 0.363 |
42DAP/reference | 1.16807 | 0.534 |
43DAP/reference | 1.06244 | 0.802 |
47DAP/reference | 1.1434 | 0.582 |
52DAP/reference | 1.3445 | 0.028 |
57DAP/reference | 1.14089 | 0.25 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9738 | 0.688 |
17DAP/reference | 1.08052 | 0.063 |
27DAP/reference | 1.03794 | 0.902 |
39DAP/reference | 1.15443 | 0.247 |
41DAP/reference | 0.91338 | 0.373 |
42DAP/reference | 0.95146 | 0.392 |
43DAP/reference | 1.00277 | 0.875 |
47DAP/reference | 0.94011 | 0.253 |
52DAP/reference | 1.11956 | 0.065 |
57DAP/reference | 1.19273 | 0.06 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16914 | 0.366 |
17DAP/reference | 0.89432 | 0.335 |
27DAP/reference | 0.82765 | 0.27 |
39DAP/reference | 1.06884 | 0.466 |
41DAP/reference | 1.05378 | 0.674 |
42DAP/reference | 0.69895 | 0.032 |
43DAP/reference | 0.88485 | 0.092 |
47DAP/reference | 0.94567 | 0.278 |
52DAP/reference | 0.77228 | 0.184 |
57DAP/reference | 0.74383 | 0.092 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.98486 | 1 |
26DAP/20DAP | 0.77662 | 0.244 |
34DAP/26DAP | 0.9606 | 0.945 |
51DAP/34DAP | 1.0109 | 0.883 |
52DAP/51DAP | 1.09373 | 0.722 |
53DAP/52DAP | 0.90555 | 0.776 |
55DAP/53DAP | 1.529 | 0.234 |
57DAP/55DAP | 1.04659 | 0.899 |
62DAP/57DAP | 1.10652 | 0.833 |
68DAP/62DAP | 0.87849 | 0.543 |
68DAP/14DAP | 0.826 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.09046 | 0.591 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.03536 | 0.666 |
Mature Green Tomato/Ripe Tomato | 0.99623 | 0.835 |
Immature Eggplant/Mature Eggplant | 1.06685 | 0.321 |
Ripe Pepper/Ripe Tomato | 2.11308 | 1 |
Mature Eggplant/Ripe Tomato | 1.21301 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.98032 | 0.944 |
1-1-2/M82 | 0.95401 | |
12-2/M82 | 0.91995 | |
12-4/M82 | 0.93777 | 1 |
1-3/M82 | 0.83793 | 0.376 |
2-1-1/M82 | 1.11983 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.07477 | 0.695 |
3-2/M82 | 0.87305 | |
4-1-1/M82 | 0.84864 | 1 |
4-1/M82 | 1.00822 | |
4-3-2/M82 | 0.9406 | 1 |
4-3/M82 | 0.75758 | 0.25 |
5-3/M82 | 0.95281 | 1 |
6-2/M82 | 0.8753 | |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.9384 | 0.881 |
9-3-2/M82 | 0.92702 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.15196 | 0.493 |
IL2-6/WTpooled | 0.9228 | 1 |
IL7-5/WTpooled | 0.81401 | |
IL7-3/WTpooled | 1.15299 | 1 |
IL12-4/WTpooled | 0.83145 | 0.554 |
IL1-4/WTpooled | 1.08991 | 1 |
WT/WTpooled | 0.87975 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.003 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99403 | 1 |
DC3000/delta hrp 6h | 1.07152 | 1 |
DC3000/delta hrp 12h | 1.04422 | 1 |
DC3000/delta hrp 24h | 1.05213 | 0.62 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.76008 | 0.413 |
DC3000 delta B/DC3000 delta AB | 0.69519 | 0.023 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.30517 | 1 |
Exp 36h | 0.93805 | 0.879 |
Exp 60h | 0.90373 | 0.754 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97568 | 1 |
Var 0h | 0.90862 | 1 |
Var 12h I row2-row1 | 0.86443 | 0.363 |
Var 12h NI row2-row1 | 0.94408 | 0.494 |
Var 36h I row2-row1 | 0.92629 | 0.805 |
Var 36h NI row2-row1 | 1.22525 | 1 |
Var 60h I row2-row1 | 1.50955 | 0.562 |
Var 60h NI row2-row1 | 1.01617 | 0.904 |
Time course 0hI-0hNI | 1.02382 | 0.833 |
Time course 12hI-12hNI | 0.96476 | 0.65 |
Time course 36hI-36hNI | 0.90614 | 0.082 |
Time course 60hI-60hNI | 0.55079 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.9032 | 0.291 |
transgenic ySAMdc/azygous control (breaker) | 0.95632 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.97507 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97945 | 0.295 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.33631 | 0.233 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.90459 | 1 |
Manapal/WT (break) | 0.87919 | 1 |
Manapal/WT (red) | 1.21875 | 0.413 |
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