Expression of 1-1-1.1.8.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.115360.697
27DAP/17DAP1.115960.845
39DAP/27DAP0.946660.652
41DAP/39DAP1.003180.925
42DAP/41DAP0.994881
43DAP/42DAP1.036951
47DAP/43DAP1.145770.889
52DAP/47DAP1.036560.854
57DAP/52DAP1.066010.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.189210.013
17DAP/reference1.112310.028
27DAP/reference1.136670.348
39DAP/reference1.052540.453
41DAP/reference1.148750.067
42DAP/reference1.099750.016
43DAP/reference0.999630.882
47DAP/reference1.047410.509
52DAP/reference0.997750.709
57DAP/reference0.929890.138

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.904680.484
27DAP/17DAP1.072590.969
39DAP/27DAP0.880820.291
41DAP/39DAP1.001791
42DAP/41DAP1.263870.622
43DAP/42DAP0.92870.399
47DAP/43DAP1.189980.383
52DAP/47DAP0.945330.886
57DAP/52DAP1.078190.759
57DAP/7DAP0.971881

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.893890.246
17DAP/reference0.928210.064
27DAP/reference0.798780.01
39DAP/reference0.81750.011
41DAP/reference0.873680.107
42DAP/reference0.840930.033
43DAP/reference0.781810.011
47DAP/reference0.841960.079
52DAP/reference0.7690.012
57DAP/reference0.788790.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.036850.66
17DAP/reference1.084810.32
27DAP/reference0.99540.765
39DAP/reference1.176920.175
41DAP/reference1.094760.944
42DAP/reference1.062181
43DAP/reference1.110960.466
47DAP/reference0.88930.094
52DAP/reference1.050820.3
57DAP/reference1.038540.593

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.957430.29
17DAP/reference0.990110.763
27DAP/reference0.94740.155
39DAP/reference0.878610.028
41DAP/reference0.880730.148
42DAP/reference0.90450.287
43DAP/reference0.943820.384
47DAP/reference0.861820.01
52DAP/reference0.725730.066
57DAP/reference0.703340.078

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.809590.89
26DAP/20DAP1.087990.66
34DAP/26DAP0.918330.763
51DAP/34DAP0.874180.292
52DAP/51DAP1.0190.888
53DAP/52DAP0.934390.703
55DAP/53DAP1.11230.876
57DAP/55DAP1.012351
62DAP/57DAP1.079010.185
68DAP/62DAP1.15515
68DAP/14DAP0.710911

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.038560.558

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.038810.063
Mature Green Tomato/Ripe Tomato1.145440.814
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato6.59298
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.045071
1-1-2/M820.999721
12-2/M821.117921
12-4/M820.905451
1-3/M821.158570.248
2-1-1/M821.246180.689
2-1/M821.270831
2-6/M820.931261
3-2/M821.04616
4-1-1/M820.933981
4-1/M821.03399
4-3-2/M820.87668
4-3/M821.003661
5-3/M821.016421
6-2/M821.004431
6-3/M821.100491
7-1/M820.838080.803
7-2/M821.109241
9-3-2/M820.93107

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.029651
IL2-6/WTpooled1.038361
IL7-5/WTpooled0.855091
IL7-3/WTpooled0.933271
IL12-4/WTpooled1.000271
IL1-4/WTpooled1.040231
WT/WTpooled0.962191

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.17170.193

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.011251
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.002661
DC3000/delta hrp 24h1.036580.633

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.880230.05
DC3000 delta B/DC3000 delta AB0.835370.189

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.92931
Exp 36hN/AN/A
Exp 60h0.608590.249

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.928511
Var 0h1.09680.98
Var 12h I row2-row10.830710.338
Var 12h NI row2-row11.116071
Var 36h I row2-row11.157511
Var 36h NI row2-row11.042471
Var 60h I row2-row10.973451
Var 60h NI row2-row10.883850.516
Time course 0hI-0hNI0.980560.942
Time course 12hI-12hNI0.952170.725
Time course 36hI-36hNI1.001090.753
Time course 60hI-60hNI0.732070.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.79210.246
transgenic ySAMdc/azygous control (breaker)0.870870.49
transgenic ySAMdc/azygous control (red)1.227080.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.910580.047

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.915220.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.907180.088
Manapal/WT (break)1.133491
Manapal/WT (red)0.856210.216