Expression of 1-1-1.1.8.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.11536 | 0.697 |
27DAP/17DAP | 1.11596 | 0.845 |
39DAP/27DAP | 0.94666 | 0.652 |
41DAP/39DAP | 1.00318 | 0.925 |
42DAP/41DAP | 0.99488 | 1 |
43DAP/42DAP | 1.03695 | 1 |
47DAP/43DAP | 1.14577 | 0.889 |
52DAP/47DAP | 1.03656 | 0.854 |
57DAP/52DAP | 1.06601 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18921 | 0.013 |
17DAP/reference | 1.11231 | 0.028 |
27DAP/reference | 1.13667 | 0.348 |
39DAP/reference | 1.05254 | 0.453 |
41DAP/reference | 1.14875 | 0.067 |
42DAP/reference | 1.09975 | 0.016 |
43DAP/reference | 0.99963 | 0.882 |
47DAP/reference | 1.04741 | 0.509 |
52DAP/reference | 0.99775 | 0.709 |
57DAP/reference | 0.92989 | 0.138 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.90468 | 0.484 |
27DAP/17DAP | 1.07259 | 0.969 |
39DAP/27DAP | 0.88082 | 0.291 |
41DAP/39DAP | 1.00179 | 1 |
42DAP/41DAP | 1.26387 | 0.622 |
43DAP/42DAP | 0.9287 | 0.399 |
47DAP/43DAP | 1.18998 | 0.383 |
52DAP/47DAP | 0.94533 | 0.886 |
57DAP/52DAP | 1.07819 | 0.759 |
57DAP/7DAP | 0.97188 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89389 | 0.246 |
17DAP/reference | 0.92821 | 0.064 |
27DAP/reference | 0.79878 | 0.01 |
39DAP/reference | 0.8175 | 0.011 |
41DAP/reference | 0.87368 | 0.107 |
42DAP/reference | 0.84093 | 0.033 |
43DAP/reference | 0.78181 | 0.011 |
47DAP/reference | 0.84196 | 0.079 |
52DAP/reference | 0.769 | 0.012 |
57DAP/reference | 0.78879 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03685 | 0.66 |
17DAP/reference | 1.08481 | 0.32 |
27DAP/reference | 0.9954 | 0.765 |
39DAP/reference | 1.17692 | 0.175 |
41DAP/reference | 1.09476 | 0.944 |
42DAP/reference | 1.06218 | 1 |
43DAP/reference | 1.11096 | 0.466 |
47DAP/reference | 0.8893 | 0.094 |
52DAP/reference | 1.05082 | 0.3 |
57DAP/reference | 1.03854 | 0.593 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95743 | 0.29 |
17DAP/reference | 0.99011 | 0.763 |
27DAP/reference | 0.9474 | 0.155 |
39DAP/reference | 0.87861 | 0.028 |
41DAP/reference | 0.88073 | 0.148 |
42DAP/reference | 0.9045 | 0.287 |
43DAP/reference | 0.94382 | 0.384 |
47DAP/reference | 0.86182 | 0.01 |
52DAP/reference | 0.72573 | 0.066 |
57DAP/reference | 0.70334 | 0.078 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.80959 | 0.89 |
26DAP/20DAP | 1.08799 | 0.66 |
34DAP/26DAP | 0.91833 | 0.763 |
51DAP/34DAP | 0.87418 | 0.292 |
52DAP/51DAP | 1.019 | 0.888 |
53DAP/52DAP | 0.93439 | 0.703 |
55DAP/53DAP | 1.1123 | 0.876 |
57DAP/55DAP | 1.01235 | 1 |
62DAP/57DAP | 1.07901 | 0.185 |
68DAP/62DAP | 1.15515 | |
68DAP/14DAP | 0.71091 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.03856 | 0.558 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.03881 | 0.063 |
Mature Green Tomato/Ripe Tomato | 1.14544 | 0.814 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 6.59298 | |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.04507 | 1 |
1-1-2/M82 | 0.99972 | 1 |
12-2/M82 | 1.11792 | 1 |
12-4/M82 | 0.90545 | 1 |
1-3/M82 | 1.15857 | 0.248 |
2-1-1/M82 | 1.24618 | 0.689 |
2-1/M82 | 1.27083 | 1 |
2-6/M82 | 0.93126 | 1 |
3-2/M82 | 1.04616 | |
4-1-1/M82 | 0.93398 | 1 |
4-1/M82 | 1.03399 | |
4-3-2/M82 | 0.87668 | |
4-3/M82 | 1.00366 | 1 |
5-3/M82 | 1.01642 | 1 |
6-2/M82 | 1.00443 | 1 |
6-3/M82 | 1.10049 | 1 |
7-1/M82 | 0.83808 | 0.803 |
7-2/M82 | 1.10924 | 1 |
9-3-2/M82 | 0.93107 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.02965 | 1 |
IL2-6/WTpooled | 1.03836 | 1 |
IL7-5/WTpooled | 0.85509 | 1 |
IL7-3/WTpooled | 0.93327 | 1 |
IL12-4/WTpooled | 1.00027 | 1 |
IL1-4/WTpooled | 1.04023 | 1 |
WT/WTpooled | 0.96219 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.1717 | 0.193 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01125 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.00266 | 1 |
DC3000/delta hrp 24h | 1.03658 | 0.633 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.88023 | 0.05 |
DC3000 delta B/DC3000 delta AB | 0.83537 | 0.189 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.9293 | 1 |
Exp 36h | N/A | N/A |
Exp 60h | 0.60859 | 0.249 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.92851 | 1 |
Var 0h | 1.0968 | 0.98 |
Var 12h I row2-row1 | 0.83071 | 0.338 |
Var 12h NI row2-row1 | 1.11607 | 1 |
Var 36h I row2-row1 | 1.15751 | 1 |
Var 36h NI row2-row1 | 1.04247 | 1 |
Var 60h I row2-row1 | 0.97345 | 1 |
Var 60h NI row2-row1 | 0.88385 | 0.516 |
Time course 0hI-0hNI | 0.98056 | 0.942 |
Time course 12hI-12hNI | 0.95217 | 0.725 |
Time course 36hI-36hNI | 1.00109 | 0.753 |
Time course 60hI-60hNI | 0.73207 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.7921 | 0.246 |
transgenic ySAMdc/azygous control (breaker) | 0.87087 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.22708 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.91058 | 0.047 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.91522 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.90718 | 0.088 |
Manapal/WT (break) | 1.13349 | 1 |
Manapal/WT (red) | 0.85621 | 0.216 |
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