Expression of 1-1-1.1.8.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.392450.291
27DAP/17DAP1.015871
39DAP/27DAP1.13920.825
41DAP/39DAP1.027430.849
42DAP/41DAP1.236280.802
43DAP/42DAP1.084521
47DAP/43DAP1.022490.864
52DAP/47DAP0.834450.602
57DAP/52DAP0.910240.926

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.080630.116
17DAP/reference1.067690.053
27DAP/reference1.0190.612
39DAP/reference0.992720.885
41DAP/reference1.001461
42DAP/reference1.044840.366
43DAP/reference0.966740.448
47DAP/reference0.959980.322
52DAP/reference0.960620.31
57DAP/reference1.030340.802

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.070470.675
27DAP/17DAP1.047440.942
39DAP/27DAP1.053950.677
41DAP/39DAP1.039850.861
42DAP/41DAP1.04530.916
43DAP/42DAP1.139190.031
47DAP/43DAP0.973180.857
52DAP/47DAP1.195690.474
57DAP/52DAP1.136120.714
57DAP/7DAP1.309531

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.916340.146
17DAP/reference0.806120.013
27DAP/reference1.125810.088
39DAP/reference1.011620.745
41DAP/reference0.950210.298
42DAP/reference1.181420.308
43DAP/reference1.058820.873
47DAP/reference1.003521
52DAP/reference1.128020.636
57DAP/reference1.04150.746

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.027630.55
17DAP/reference1.082150.117
27DAP/reference0.974030.483
39DAP/reference1.097730.309
41DAP/reference1.000410.735
42DAP/reference1.156230.099
43DAP/reference1.308310.159
47DAP/reference1.120280.218
52DAP/reference1.068850.085
57DAP/reference1.057810.15

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.921050.311
17DAP/reference0.922330.426
27DAP/reference0.845480.092
39DAP/reference1.024640.773
41DAP/reference1.000420.826
42DAP/reference1.006191
43DAP/reference0.825380.084
47DAP/reference1.05010.187
52DAP/reference1.041970.674
57DAP/reference1.04290.827

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.009511
26DAP/20DAP0.837540.512
34DAP/26DAP1.270951
51DAP/34DAP0.884190.606
52DAP/51DAP0.992551
53DAP/52DAP0.973660.882
55DAP/53DAP0.938720.686
57DAP/55DAP1.309490.906
62DAP/57DAP1.091650.569
68DAP/62DAP0.897020.81
68DAP/14DAP1.061460.594

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.111320.229

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.943670.673
Mature Green Tomato/Ripe Tomato1.135530.814
Immature Eggplant/Mature Eggplant1.109230.23
Ripe Pepper/Ripe Tomato0.892520.293
Mature Eggplant/Ripe Tomato0.495891

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.09599
1-1-2/M821.298261
12-2/M820.802990.955
12-4/M820.956261
1-3/M821.784050.248
2-1-1/M820.74398
2-1/M820.622510.519
2-6/M821.089190.425
3-2/M821.31528
4-1-1/M820.925621
4-1/M820.69802
4-3-2/M820.808851
4-3/M821.443561
5-3/M820.950261
6-2/M820.976031
6-3/M820.599510.619
7-1/M820.75208
7-2/M821.212951
9-3-2/M820.93102

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.963291
IL2-6/WTpooled1.161940.659
IL7-5/WTpooled0.751591
IL7-3/WTpooled1.276291
IL12-4/WTpooled0.766910.543
IL1-4/WTpooled1.019491
WT/WTpooled0.819271

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.029741

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.96311
DC3000/delta hrp 6h1.055931
DC3000/delta hrp 12h1.018521
DC3000/delta hrp 24h1.073620.453

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.052441
Exp 36h1.053921
Exp 60h1.098560.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.07331
Var 0h1.116590.245
Var 12h I row2-row11.298660.324
Var 12h NI row2-row10.819391
Var 36h I row2-row11.105591
Var 36h NI row2-row10.75560.522
Var 60h I row2-row11.031271
Var 60h NI row2-row10.938821
Time course 0hI-0hNI0.850920.325
Time course 12hI-12hNI1.039020.788
Time course 36hI-36hNI1.267210.011
Time course 60hI-60hNI1.585030.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.917050.315
transgenic ySAMdc/azygous control (breaker)1.097360.248
transgenic ySAMdc/azygous control (red)1.07890.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.969180.117

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.466580.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.153810.093
Manapal/WT (break)1.357440.183
Manapal/WT (red)1.150330.222