Expression of 1-1-1.1.8.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.082250.975
27DAP/17DAP1.013621
39DAP/27DAP1.046221
41DAP/39DAP1.182980.722
42DAP/41DAP1.329120.608
43DAP/42DAP0.761220.554
47DAP/43DAP0.881570.603
52DAP/47DAP1.324850.674
57DAP/52DAP0.965180.957

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.983230.589
17DAP/reference1.117370.015
27DAP/reference1.01110.894
39DAP/reference1.012340.786
41DAP/reference1.046410.855
42DAP/reference0.944870.134
43DAP/reference1.03140.838
47DAP/reference0.90370.035
52DAP/reference0.782060.091
57DAP/reference0.831120.033

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.946680.496
27DAP/17DAP0.985080.919
39DAP/27DAP0.946490.437
41DAP/39DAP1.052510.896
42DAP/41DAP1.034180.976
43DAP/42DAP1.069330.413
47DAP/43DAP0.97210.843
52DAP/47DAP0.964360.917
57DAP/52DAP1.029150.874
57DAP/7DAP1.235660.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.832340.066
17DAP/reference0.857460.192
27DAP/reference1.1211
39DAP/reference1.092370.538
41DAP/reference0.886290.166
42DAP/reference1.025890.828
43DAP/reference0.856780.115
47DAP/reference1.047930.901
52DAP/reference0.888020.15
57DAP/reference0.867390.109

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.075820.315
17DAP/reference1.091660.496
27DAP/reference0.855830.167
39DAP/reference1.026131
41DAP/reference1.083920.471
42DAP/reference0.98130.534
43DAP/reference1.52370.011
47DAP/reference1.049220.274
52DAP/reference1.011460.988
57DAP/reference1.161460.252

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.853210.092
17DAP/reference1.041770.833
27DAP/reference0.87688
39DAP/reference0.867310.054
41DAP/reference0.98320.682
42DAP/reference0.889190.361
43DAP/reference0.796020.15
47DAP/reference0.951890.396
52DAP/reference1.058480.683
57DAP/reference0.811080.136

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.84760.159
26DAP/20DAP0.952311
34DAP/26DAP0.96440.94
51DAP/34DAP0.933150.674
52DAP/51DAP1.01420.888
53DAP/52DAP0.985560.983
55DAP/53DAP1.095960.826
57DAP/55DAP0.835120.486
62DAP/57DAP1.249870.081
68DAP/62DAP0.839310.668
68DAP/14DAP0.71230.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.832540.043

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.58735
Mature Green Tomato/Ripe Tomato0.883860.347
Immature Eggplant/Mature Eggplant0.925190.594
Ripe Pepper/Ripe Tomato0.74650.224
Mature Eggplant/Ripe Tomato1.560020.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.78640.944
1-1-2/M820.872820.804
12-2/M821.028811
12-4/M821.104340.694
1-3/M820.883370.339
2-1-1/M820.79947
2-1/M820.74826
2-6/M821.117080.505
3-2/M820.77812
4-1-1/M821.043421
4-1/M821.05904
4-3-2/M820.80001
4-3/M820.705180.578
5-3/M820.961181
6-2/M820.892491
6-3/M821.054131
7-1/M820.977761
7-2/M820.929060.553
9-3-2/M820.88395

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.226680.277
IL2-6/WTpooled1.979070.427
IL7-5/WTpooled1.269411
IL7-3/WTpooled1.212681
IL12-4/WTpooled1.416720.516
IL1-4/WTpooled2.185810.426
WT/WTpooled1.040321

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.943590.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.958981
DC3000/delta hrp 6h0.761960.942
DC3000/delta hrp 12h1.188371
DC3000/delta hrp 24h1.067910.397

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.878770.46
DC3000 delta B/DC3000 delta AB0.98350.936

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.939621
Exp 36h0.911310.82
Exp 60h1.090640.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.034381
Var 0h0.866921
Var 12h I row2-row11.120950.443
Var 12h NI row2-row10.852030.349
Var 36h I row2-row10.76840.805
Var 36h NI row2-row11.03971
Var 60h I row2-row11.176770.562
Var 60h NI row2-row11.165060.904
Time course 0hI-0hNI1.065310.764
Time course 12hI-12hNI1.010560.842
Time course 36hI-36hNI0.943020.202
Time course 60hI-60hNI1.076620.137

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.101210.408
transgenic ySAMdc/azygous control (breaker)0.640410.131
transgenic ySAMdc/azygous control (red)0.868081

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.000491

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.600040.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.807640.172
Manapal/WT (break)0.803250.333
Manapal/WT (red)0.794350.181