Expression of 1-1-1.1.8.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08225 | 0.975 |
27DAP/17DAP | 1.01362 | 1 |
39DAP/27DAP | 1.04622 | 1 |
41DAP/39DAP | 1.18298 | 0.722 |
42DAP/41DAP | 1.32912 | 0.608 |
43DAP/42DAP | 0.76122 | 0.554 |
47DAP/43DAP | 0.88157 | 0.603 |
52DAP/47DAP | 1.32485 | 0.674 |
57DAP/52DAP | 0.96518 | 0.957 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98323 | 0.589 |
17DAP/reference | 1.11737 | 0.015 |
27DAP/reference | 1.0111 | 0.894 |
39DAP/reference | 1.01234 | 0.786 |
41DAP/reference | 1.04641 | 0.855 |
42DAP/reference | 0.94487 | 0.134 |
43DAP/reference | 1.0314 | 0.838 |
47DAP/reference | 0.9037 | 0.035 |
52DAP/reference | 0.78206 | 0.091 |
57DAP/reference | 0.83112 | 0.033 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94668 | 0.496 |
27DAP/17DAP | 0.98508 | 0.919 |
39DAP/27DAP | 0.94649 | 0.437 |
41DAP/39DAP | 1.05251 | 0.896 |
42DAP/41DAP | 1.03418 | 0.976 |
43DAP/42DAP | 1.06933 | 0.413 |
47DAP/43DAP | 0.9721 | 0.843 |
52DAP/47DAP | 0.96436 | 0.917 |
57DAP/52DAP | 1.02915 | 0.874 |
57DAP/7DAP | 1.23566 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83234 | 0.066 |
17DAP/reference | 0.85746 | 0.192 |
27DAP/reference | 1.1211 | |
39DAP/reference | 1.09237 | 0.538 |
41DAP/reference | 0.88629 | 0.166 |
42DAP/reference | 1.02589 | 0.828 |
43DAP/reference | 0.85678 | 0.115 |
47DAP/reference | 1.04793 | 0.901 |
52DAP/reference | 0.88802 | 0.15 |
57DAP/reference | 0.86739 | 0.109 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07582 | 0.315 |
17DAP/reference | 1.09166 | 0.496 |
27DAP/reference | 0.85583 | 0.167 |
39DAP/reference | 1.02613 | 1 |
41DAP/reference | 1.08392 | 0.471 |
42DAP/reference | 0.9813 | 0.534 |
43DAP/reference | 1.5237 | 0.011 |
47DAP/reference | 1.04922 | 0.274 |
52DAP/reference | 1.01146 | 0.988 |
57DAP/reference | 1.16146 | 0.252 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85321 | 0.092 |
17DAP/reference | 1.04177 | 0.833 |
27DAP/reference | 0.87688 | |
39DAP/reference | 0.86731 | 0.054 |
41DAP/reference | 0.9832 | 0.682 |
42DAP/reference | 0.88919 | 0.361 |
43DAP/reference | 0.79602 | 0.15 |
47DAP/reference | 0.95189 | 0.396 |
52DAP/reference | 1.05848 | 0.683 |
57DAP/reference | 0.81108 | 0.136 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.8476 | 0.159 |
26DAP/20DAP | 0.95231 | 1 |
34DAP/26DAP | 0.9644 | 0.94 |
51DAP/34DAP | 0.93315 | 0.674 |
52DAP/51DAP | 1.0142 | 0.888 |
53DAP/52DAP | 0.98556 | 0.983 |
55DAP/53DAP | 1.09596 | 0.826 |
57DAP/55DAP | 0.83512 | 0.486 |
62DAP/57DAP | 1.24987 | 0.081 |
68DAP/62DAP | 0.83931 | 0.668 |
68DAP/14DAP | 0.7123 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.83254 | 0.043 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.58735 | |
Mature Green Tomato/Ripe Tomato | 0.88386 | 0.347 |
Immature Eggplant/Mature Eggplant | 0.92519 | 0.594 |
Ripe Pepper/Ripe Tomato | 0.7465 | 0.224 |
Mature Eggplant/Ripe Tomato | 1.56002 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.7864 | 0.944 |
1-1-2/M82 | 0.87282 | 0.804 |
12-2/M82 | 1.02881 | 1 |
12-4/M82 | 1.10434 | 0.694 |
1-3/M82 | 0.88337 | 0.339 |
2-1-1/M82 | 0.79947 | |
2-1/M82 | 0.74826 | |
2-6/M82 | 1.11708 | 0.505 |
3-2/M82 | 0.77812 | |
4-1-1/M82 | 1.04342 | 1 |
4-1/M82 | 1.05904 | |
4-3-2/M82 | 0.80001 | |
4-3/M82 | 0.70518 | 0.578 |
5-3/M82 | 0.96118 | 1 |
6-2/M82 | 0.89249 | 1 |
6-3/M82 | 1.05413 | 1 |
7-1/M82 | 0.97776 | 1 |
7-2/M82 | 0.92906 | 0.553 |
9-3-2/M82 | 0.88395 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.22668 | 0.277 |
IL2-6/WTpooled | 1.97907 | 0.427 |
IL7-5/WTpooled | 1.26941 | 1 |
IL7-3/WTpooled | 1.21268 | 1 |
IL12-4/WTpooled | 1.41672 | 0.516 |
IL1-4/WTpooled | 2.18581 | 0.426 |
WT/WTpooled | 1.04032 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.94359 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95898 | 1 |
DC3000/delta hrp 6h | 0.76196 | 0.942 |
DC3000/delta hrp 12h | 1.18837 | 1 |
DC3000/delta hrp 24h | 1.06791 | 0.397 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.87877 | 0.46 |
DC3000 delta B/DC3000 delta AB | 0.9835 | 0.936 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.93962 | 1 |
Exp 36h | 0.91131 | 0.82 |
Exp 60h | 1.09064 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03438 | 1 |
Var 0h | 0.86692 | 1 |
Var 12h I row2-row1 | 1.12095 | 0.443 |
Var 12h NI row2-row1 | 0.85203 | 0.349 |
Var 36h I row2-row1 | 0.7684 | 0.805 |
Var 36h NI row2-row1 | 1.0397 | 1 |
Var 60h I row2-row1 | 1.17677 | 0.562 |
Var 60h NI row2-row1 | 1.16506 | 0.904 |
Time course 0hI-0hNI | 1.06531 | 0.764 |
Time course 12hI-12hNI | 1.01056 | 0.842 |
Time course 36hI-36hNI | 0.94302 | 0.202 |
Time course 60hI-60hNI | 1.07662 | 0.137 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.10121 | 0.408 |
transgenic ySAMdc/azygous control (breaker) | 0.64041 | 0.131 |
transgenic ySAMdc/azygous control (red) | 0.86808 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00049 | 1 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.60004 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.80764 | 0.172 |
Manapal/WT (break) | 0.80325 | 0.333 |
Manapal/WT (red) | 0.79435 | 0.181 |
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