Tomato Functional Genomics Database (TFGD)

TFGD

Home

Expression

Metabolite

sRNA

Links

Contact

Expression of 1-1-1.1.8.4

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.08225	0.975
27DAP/17DAP	1.01362	1
39DAP/27DAP	1.04622	1
41DAP/39DAP	1.18298	0.722
42DAP/41DAP	1.32912	0.608
43DAP/42DAP	0.76122	0.554
47DAP/43DAP	0.88157	0.603
52DAP/47DAP	1.32485	0.674
57DAP/52DAP	0.96518	0.957

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.98323	0.589
17DAP/reference	1.11737	0.015
27DAP/reference	1.0111	0.894
39DAP/reference	1.01234	0.786
41DAP/reference	1.04641	0.855
42DAP/reference	0.94487	0.134
43DAP/reference	1.0314	0.838
47DAP/reference	0.9037	0.035
52DAP/reference	0.78206	0.091
57DAP/reference	0.83112	0.033

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.94668	0.496
27DAP/17DAP	0.98508	0.919
39DAP/27DAP	0.94649	0.437
41DAP/39DAP	1.05251	0.896
42DAP/41DAP	1.03418	0.976
43DAP/42DAP	1.06933	0.413
47DAP/43DAP	0.9721	0.843
52DAP/47DAP	0.96436	0.917
57DAP/52DAP	1.02915	0.874
57DAP/7DAP	1.23566	0.365

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.83234	0.066
17DAP/reference	0.85746	0.192
27DAP/reference	1.1211	N/A
39DAP/reference	1.09237	0.538
41DAP/reference	0.88629	0.166
42DAP/reference	1.02589	0.828
43DAP/reference	0.85678	0.115
47DAP/reference	1.04793	0.901
52DAP/reference	0.88802	0.15
57DAP/reference	0.86739	0.109

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.07582	0.315
17DAP/reference	1.09166	0.496
27DAP/reference	0.85583	0.167
39DAP/reference	1.02613	1
41DAP/reference	1.08392	0.471
42DAP/reference	0.9813	0.534
43DAP/reference	1.5237	0.011
47DAP/reference	1.04922	0.274
52DAP/reference	1.01146	0.988
57DAP/reference	1.16146	0.252

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.85321	0.092
17DAP/reference	1.04177	0.833
27DAP/reference	0.87688	N/A
39DAP/reference	0.86731	0.054
41DAP/reference	0.9832	0.682
42DAP/reference	0.88919	0.361
43DAP/reference	0.79602	0.15
47DAP/reference	0.95189	0.396
52DAP/reference	1.05848	0.683
57DAP/reference	0.81108	0.136

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.8476	0.159
26DAP/20DAP	0.95231	1
34DAP/26DAP	0.9644	0.94
51DAP/34DAP	0.93315	0.674
52DAP/51DAP	1.0142	0.888
53DAP/52DAP	0.98556	0.983
55DAP/53DAP	1.09596	0.826
57DAP/55DAP	0.83512	0.486
62DAP/57DAP	1.24987	0.081
68DAP/62DAP	0.83931	0.668
68DAP/14DAP	0.7123	0.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.83254	0.043

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	0.58735	N/A
Mature Green Tomato/Ripe Tomato	0.88386	0.347
Immature Eggplant/Mature Eggplant	0.92519	0.594
Ripe Pepper/Ripe Tomato	0.7465	0.224
Mature Eggplant/Ripe Tomato	1.56002	0.373

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	0.7864	0.944
1-1-2/M82	0.87282	0.804
12-2/M82	1.02881	1
12-4/M82	1.10434	0.694
1-3/M82	0.88337	0.339
2-1-1/M82	0.79947	N/A
2-1/M82	0.74826	N/A
2-6/M82	1.11708	0.505
3-2/M82	0.77812	N/A
4-1-1/M82	1.04342	1
4-1/M82	1.05904	N/A
4-3-2/M82	0.80001	N/A
4-3/M82	0.70518	0.578
5-3/M82	0.96118	1
6-2/M82	0.89249	1
6-3/M82	1.05413	1
7-1/M82	0.97776	1
7-2/M82	0.92906	0.553
9-3-2/M82	0.88395	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.22668	0.277
IL2-6/WTpooled	1.97907	0.427
IL7-5/WTpooled	1.26941	1
IL7-3/WTpooled	1.21268	1
IL12-4/WTpooled	1.41672	0.516
IL1-4/WTpooled	2.18581	0.426
WT/WTpooled	1.04032	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	0.94359	0.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	0.95898	1
DC3000/delta hrp 6h	0.76196	0.942
DC3000/delta hrp 12h	1.18837	1
DC3000/delta hrp 24h	1.06791	0.397

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	0.87877	0.46
DC3000 delta B/DC3000 delta AB	0.9835	0.936

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	0.93962	1
Exp 36h	0.91131	0.82
Exp 60h	1.09064	0.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.03438	1
Var 0h	0.86692	1
Var 12h I row2-row1	1.12095	0.443
Var 12h NI row2-row1	0.85203	0.349
Var 36h I row2-row1	0.7684	0.805
Var 36h NI row2-row1	1.0397	1
Var 60h I row2-row1	1.17677	0.562
Var 60h NI row2-row1	1.16506	0.904
Time course 0hI-0hNI	1.06531	0.764
Time course 12hI-12hNI	1.01056	0.842
Time course 36hI-36hNI	0.94302	0.202
Time course 60hI-60hNI	1.07662	0.137

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	1.10121	0.408
transgenic ySAMdc/azygous control (breaker)	0.64041	0.131
transgenic ySAMdc/azygous control (red)	0.86808	1

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.00049	1

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.60004	0.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	0.80764	0.172
Manapal/WT (break)	0.80325	0.333
Manapal/WT (red)	0.79435	0.181