Expression of 1-1-1.1.9.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.341170.893
27DAP/17DAP0.807110.587
39DAP/27DAP0.825520.529
41DAP/39DAP1.006140.973
42DAP/41DAP0.929411
43DAP/42DAP1.038420.932
47DAP/43DAP1.093060.746
52DAP/47DAP1.285090.608
57DAP/52DAP1.210940.748

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.19717
17DAP/reference1.355940.011
27DAP/reference1.399520.143
39DAP/reference1.081630.903
41DAP/referenceN/AN/A
42DAP/reference0.803670.182
43DAP/referenceN/AN/A
47DAP/reference1.08428
52DAP/reference1.06787
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.921830.508
27DAP/17DAP2.392840.494
39DAP/27DAP0.53772
41DAP/39DAP1.73431
42DAP/41DAP1.38952
43DAP/42DAP0.868350.618
47DAP/43DAP1.18596
52DAP/47DAP1.04959
57DAP/52DAPN/AN/A
57DAP/7DAPN/AN/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/referenceN/AN/A
27DAP/referenceN/AN/A
39DAP/referenceN/AN/A
41DAP/referenceN/AN/A
42DAP/referenceN/AN/A
43DAP/referenceN/AN/A
47DAP/referenceN/AN/A
52DAP/reference0.37141
57DAP/referenceN/AN/A

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.588020.016
17DAP/reference0.686570.004
27DAP/reference0.763690.173
39DAP/referenceN/AN/A
41DAP/reference0.742330.118
42DAP/reference0.584920.012
43DAP/referenceN/AN/A
47DAP/reference0.733960.246
52DAP/reference0.69829
57DAP/reference0.877280.46

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/reference0.476990.071
27DAP/reference0.51991
39DAP/reference9.79862
41DAP/referenceN/AN/A
42DAP/reference1.149311
43DAP/referenceN/AN/A
47DAP/reference0.786080.009
52DAP/referenceN/AN/A
57DAP/referenceN/AN/A

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.02144
26DAP/20DAPN/AN/A
34DAP/26DAPN/AN/A
51DAP/34DAP0.701710.333
52DAP/51DAP0.894
53DAP/52DAP1.071240.845
55DAP/53DAP2.09798
57DAP/55DAP2.330980.87
62DAP/57DAP1.41848
68DAP/62DAP0.71462
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper BreakerN/AN/A

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.177490.395
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.055411
IL12-4/WTpooled1.121280.492
IL1-4/WTpooled0.85544
WT/WTpooled0.964461

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6h1.35898
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.653110.291
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.995770.886

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A