Expression of 1-1-1.1.9.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.90145 | 0.486 |
27DAP/17DAP | 0.82465 | 0.551 |
39DAP/27DAP | 1.47971 | 0.128 |
41DAP/39DAP | 0.61503 | 0.052 |
42DAP/41DAP | 1.13147 | 0.888 |
43DAP/42DAP | 1.07385 | 1 |
47DAP/43DAP | 0.8579 | 0.55 |
52DAP/47DAP | 0.8035 | 0.502 |
57DAP/52DAP | 1.64567 | 0.638 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.8069 | 0.008 |
17DAP/reference | 1.21028 | 0.22 |
27DAP/reference | 0.90838 | 0.182 |
39DAP/reference | 1.10174 | 0.445 |
41DAP/reference | 1.14703 | 0.421 |
42DAP/reference | 1.40346 | 0.001 |
43DAP/reference | 1.31927 | 0.038 |
47DAP/reference | 1.12915 | 0.433 |
52DAP/reference | 0.86218 | 0.115 |
57DAP/reference | 1.04589 | 0.744 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96135 | 0.644 |
27DAP/17DAP | 1.07019 | 0.768 |
39DAP/27DAP | 0.91156 | 0.283 |
41DAP/39DAP | 1.25601 | 0.674 |
42DAP/41DAP | 0.99492 | 0.882 |
43DAP/42DAP | 0.9097 | 0.137 |
47DAP/43DAP | 1.07487 | 0.618 |
52DAP/47DAP | 0.80683 | 0.091 |
57DAP/52DAP | 1.19607 | 0.699 |
57DAP/7DAP | N/A | N/A |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.63375 | 0.024 |
17DAP/reference | 1.70627 | 0.006 |
27DAP/reference | 1.71112 | 0.006 |
39DAP/reference | 1.36234 | 0.007 |
41DAP/reference | 1.46102 | 0.017 |
42DAP/reference | 1.56821 | 0.016 |
43DAP/reference | 1.4858 | 0.007 |
47DAP/reference | 1.54575 | 0.022 |
52DAP/reference | 1.93532 | 0.009 |
57DAP/reference | 1.76792 | 0.005 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.39492 | 0.065 |
17DAP/reference | 1.61089 | 0.012 |
27DAP/reference | 1.74327 | 0.026 |
39DAP/reference | 1.55403 | 0.013 |
41DAP/reference | 1.31607 | 0.034 |
42DAP/reference | 1.55798 | 0.007 |
43DAP/reference | 1.28702 | 0.263 |
47DAP/reference | 1.63745 | 0.009 |
52DAP/reference | 1.02236 | 1 |
57DAP/reference | 1.5058 | 0.083 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.80137 | 0.015 |
17DAP/reference | 1.35315 | 0.269 |
27DAP/reference | 1.30857 | 0.149 |
39DAP/reference | 1.68994 | 0.004 |
41DAP/reference | 1.48659 | 0.008 |
42DAP/reference | 1.51607 | 0.009 |
43DAP/reference | 1.41294 | 0.009 |
47DAP/reference | 1.0679 | 0.339 |
52DAP/reference | 1.95349 | 0.028 |
57DAP/reference | 1.31398 | 0.027 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.3389 | 0.966 |
26DAP/20DAP | 1.3653 | 0.275 |
34DAP/26DAP | 1.03683 | 1 |
51DAP/34DAP | 0.69861 | 0.068 |
52DAP/51DAP | 0.99405 | 1 |
53DAP/52DAP | 0.8776 | 0.365 |
55DAP/53DAP | 0.61053 | 0.031 |
57DAP/55DAP | 1.23777 | 0.584 |
62DAP/57DAP | 1.43003 | 0.35 |
68DAP/62DAP | 1.07223 | 0.914 |
68DAP/14DAP | 0.82187 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.46395 | 0.02 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.34508 | 0.068 |
Mature Green Tomato/Ripe Tomato | 1.22774 | 0.437 |
Immature Eggplant/Mature Eggplant | 1.40229 | 0.053 |
Ripe Pepper/Ripe Tomato | 0.97959 | 1 |
Mature Eggplant/Ripe Tomato | 1.15955 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.83816 | 0.907 |
1-1-2/M82 | 1.25911 | 0.972 |
12-2/M82 | 0.73343 | 0.535 |
12-4/M82 | 1.07333 | 1 |
1-3/M82 | 1.68922 | 0.277 |
2-1-1/M82 | 0.78852 | 0.465 |
2-1/M82 | 0.8208 | 0.74 |
2-6/M82 | 1.01588 | 1 |
3-2/M82 | 0.83599 | 0.428 |
4-1-1/M82 | 1.04734 | 1 |
4-1/M82 | 1.05744 | 1 |
4-3-2/M82 | 1.69944 | 0.284 |
4-3/M82 | 1.51698 | 0.268 |
5-3/M82 | 1.18043 | 0.572 |
6-2/M82 | 0.8695 | |
6-3/M82 | 1.05026 | 1 |
7-1/M82 | 1.07752 | 1 |
7-2/M82 | 1.15444 | 1 |
9-3-2/M82 | 1.10665 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.0571 | 1 |
IL2-6/WTpooled | 1.35135 | 0.419 |
IL7-5/WTpooled | 1.16807 | 0.792 |
IL7-3/WTpooled | 1.26247 | 1 |
IL12-4/WTpooled | 1.01572 | 1 |
IL1-4/WTpooled | 1.16683 | 1 |
WT/WTpooled | 0.92557 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.8515 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.07877 | 0.724 |
DC3000/delta hrp 6h | 0.92913 | 0.95 |
DC3000/delta hrp 12h | 0.98658 | 1 |
DC3000/delta hrp 24h | 1.06956 | 0.567 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.93301 | 0.66 |
DC3000 delta B/DC3000 delta AB | 1.17205 | 0.377 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.02404 | 1 |
Exp 36h | 1.50617 | 1 |
Exp 60h | 1.16323 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99365 | 1 |
Var 0h | 2.34087 | 0.936 |
Var 12h I row2-row1 | 0.95037 | 0.856 |
Var 12h NI row2-row1 | 1.02968 | 1 |
Var 36h I row2-row1 | 1.02367 | 1 |
Var 36h NI row2-row1 | 0.78345 | 0.522 |
Var 60h I row2-row1 | 1.17902 | 0.562 |
Var 60h NI row2-row1 | 0.76996 | 0.408 |
Time course 0hI-0hNI | 0.84617 | 0.162 |
Time course 12hI-12hNI | 1.06624 | 0.55 |
Time course 36hI-36hNI | 1.38963 | 0.114 |
Time course 60hI-60hNI | 1.36755 | 0.033 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.00368 | 1 |
transgenic ySAMdc/azygous control (breaker) | 1.54505 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.27438 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.2485 | 0.055 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.76151 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.94705 | 1 |
Manapal/WT (break) | 1.34109 | 0.183 |
Manapal/WT (red) | 1.83707 | 0.137 |
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