Expression of 1-1-1.1.9.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.901450.486
27DAP/17DAP0.824650.551
39DAP/27DAP1.479710.128
41DAP/39DAP0.615030.052
42DAP/41DAP1.131470.888
43DAP/42DAP1.073851
47DAP/43DAP0.85790.55
52DAP/47DAP0.80350.502
57DAP/52DAP1.645670.638

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.80690.008
17DAP/reference1.210280.22
27DAP/reference0.908380.182
39DAP/reference1.101740.445
41DAP/reference1.147030.421
42DAP/reference1.403460.001
43DAP/reference1.319270.038
47DAP/reference1.129150.433
52DAP/reference0.862180.115
57DAP/reference1.045890.744

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.961350.644
27DAP/17DAP1.070190.768
39DAP/27DAP0.911560.283
41DAP/39DAP1.256010.674
42DAP/41DAP0.994920.882
43DAP/42DAP0.90970.137
47DAP/43DAP1.074870.618
52DAP/47DAP0.806830.091
57DAP/52DAP1.196070.699
57DAP/7DAPN/AN/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.633750.024
17DAP/reference1.706270.006
27DAP/reference1.711120.006
39DAP/reference1.362340.007
41DAP/reference1.461020.017
42DAP/reference1.568210.016
43DAP/reference1.48580.007
47DAP/reference1.545750.022
52DAP/reference1.935320.009
57DAP/reference1.767920.005

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.394920.065
17DAP/reference1.610890.012
27DAP/reference1.743270.026
39DAP/reference1.554030.013
41DAP/reference1.316070.034
42DAP/reference1.557980.007
43DAP/reference1.287020.263
47DAP/reference1.637450.009
52DAP/reference1.022361
57DAP/reference1.50580.083

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.801370.015
17DAP/reference1.353150.269
27DAP/reference1.308570.149
39DAP/reference1.689940.004
41DAP/reference1.486590.008
42DAP/reference1.516070.009
43DAP/reference1.412940.009
47DAP/reference1.06790.339
52DAP/reference1.953490.028
57DAP/reference1.313980.027

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.33890.966
26DAP/20DAP1.36530.275
34DAP/26DAP1.036831
51DAP/34DAP0.698610.068
52DAP/51DAP0.994051
53DAP/52DAP0.87760.365
55DAP/53DAP0.610530.031
57DAP/55DAP1.237770.584
62DAP/57DAP1.430030.35
68DAP/62DAP1.072230.914
68DAP/14DAP0.821871

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.463950.02

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.345080.068
Mature Green Tomato/Ripe Tomato1.227740.437
Immature Eggplant/Mature Eggplant1.402290.053
Ripe Pepper/Ripe Tomato0.979591
Mature Eggplant/Ripe Tomato1.159551

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.838160.907
1-1-2/M821.259110.972
12-2/M820.733430.535
12-4/M821.073331
1-3/M821.689220.277
2-1-1/M820.788520.465
2-1/M820.82080.74
2-6/M821.015881
3-2/M820.835990.428
4-1-1/M821.047341
4-1/M821.057441
4-3-2/M821.699440.284
4-3/M821.516980.268
5-3/M821.180430.572
6-2/M820.8695
6-3/M821.050261
7-1/M821.077521
7-2/M821.154441
9-3-2/M821.106651

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.05711
IL2-6/WTpooled1.351350.419
IL7-5/WTpooled1.168070.792
IL7-3/WTpooled1.262471
IL12-4/WTpooled1.015721
IL1-4/WTpooled1.166831
WT/WTpooled0.925571

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.85150.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.078770.724
DC3000/delta hrp 6h0.929130.95
DC3000/delta hrp 12h0.986581
DC3000/delta hrp 24h1.069560.567

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.933010.66
DC3000 delta B/DC3000 delta AB1.172050.377

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.024041
Exp 36h1.506171
Exp 60h1.163231

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.993651
Var 0h2.340870.936
Var 12h I row2-row10.950370.856
Var 12h NI row2-row11.029681
Var 36h I row2-row11.023671
Var 36h NI row2-row10.783450.522
Var 60h I row2-row11.179020.562
Var 60h NI row2-row10.769960.408
Time course 0hI-0hNI0.846170.162
Time course 12hI-12hNI1.066240.55
Time course 36hI-36hNI1.389630.114
Time course 60hI-60hNI1.367550.033

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.003681
transgenic ySAMdc/azygous control (breaker)1.545050.248
transgenic ySAMdc/azygous control (red)1.274380.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.24850.055

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.761510.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.947051
Manapal/WT (break)1.341090.183
Manapal/WT (red)1.837070.137