Expression of 1-1-1.1.9.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.1287 | 0.681 |
27DAP/17DAP | 1.2416 | 0.788 |
39DAP/27DAP | 0.96981 | 0.733 |
41DAP/39DAP | 0.9809 | 0.883 |
42DAP/41DAP | 0.95788 | 1 |
43DAP/42DAP | 1.12191 | 0.974 |
47DAP/43DAP | 1.09887 | 0.769 |
52DAP/47DAP | 0.78817 | 0.455 |
57DAP/52DAP | 1.03954 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07071 | 0.265 |
17DAP/reference | 1.07571 | 0.012 |
27DAP/reference | 1.01018 | 1 |
39DAP/reference | 1.07687 | 0.497 |
41DAP/reference | 1.13062 | 0.079 |
42DAP/reference | 1.12433 | 0.037 |
43DAP/reference | 0.987 | 0.785 |
47DAP/reference | 1.08935 | 0.009 |
52DAP/reference | 1.0634 | 0.354 |
57DAP/reference | 1.03857 | 0.496 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02376 | 0.841 |
27DAP/17DAP | 1.06522 | 0.78 |
39DAP/27DAP | 1.04731 | 0.663 |
41DAP/39DAP | 0.97205 | 0.968 |
42DAP/41DAP | 1.08379 | 0.694 |
43DAP/42DAP | 0.94817 | 0.558 |
47DAP/43DAP | 1.03802 | 0.844 |
52DAP/47DAP | 0.98584 | 0.935 |
57DAP/52DAP | 0.98396 | 0.763 |
57DAP/7DAP | 1.24728 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89165 | 0.183 |
17DAP/reference | 0.90418 | 0.056 |
27DAP/reference | 0.86136 | 0.013 |
39DAP/reference | 0.78839 | 0.011 |
41DAP/reference | 0.87246 | 0.032 |
42DAP/reference | 0.8646 | 0.032 |
43DAP/reference | 0.85495 | 0.035 |
47DAP/reference | 0.8123 | 0.222 |
52DAP/reference | 0.76229 | 0.027 |
57DAP/reference | 0.88505 | 0.052 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18125 | 0.062 |
17DAP/reference | 1.21598 | 0.038 |
27DAP/reference | 1.10373 | 0.692 |
39DAP/reference | 1.22945 | 0.136 |
41DAP/reference | 0.91642 | 0.441 |
42DAP/reference | 1.10577 | 0.649 |
43DAP/reference | 1.13827 | 0.105 |
47DAP/reference | 1.3142 | 0.046 |
52DAP/reference | 1.22759 | 0.014 |
57DAP/reference | 1.23377 | 0.057 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91046 | 0.268 |
17DAP/reference | 1.1331 | 0.496 |
27DAP/reference | 0.88152 | 0.147 |
39DAP/reference | 0.91692 | 0.271 |
41DAP/reference | 1.01573 | 0.754 |
42DAP/reference | 0.98115 | 0.671 |
43DAP/reference | 0.98677 | 0.712 |
47DAP/reference | 1.1794 | 0.06 |
52DAP/reference | 0.9786 | 0.704 |
57DAP/reference | 1.00796 | 1 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.02555 | 1 |
26DAP/20DAP | 1.03979 | 0.875 |
34DAP/26DAP | 1.06018 | 0.819 |
51DAP/34DAP | 0.91027 | 0.498 |
52DAP/51DAP | 1.05679 | 0.51 |
53DAP/52DAP | 0.82099 | 0.64 |
55DAP/53DAP | 0.91195 | 0.648 |
57DAP/55DAP | 1.26895 | 0.643 |
62DAP/57DAP | 0.96858 | 0.994 |
68DAP/62DAP | 0.91882 | 0.464 |
68DAP/14DAP | 0.78153 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.3536 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.78809 | 0.265 |
Mature Green Tomato/Ripe Tomato | 0.81568 | 0.2 |
Immature Eggplant/Mature Eggplant | 1.12464 | 0.267 |
Ripe Pepper/Ripe Tomato | 1.12584 | 1 |
Mature Eggplant/Ripe Tomato | 1.02244 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.97812 | 0.944 |
1-1-2/M82 | 1.02578 | 1 |
12-2/M82 | 1.08777 | 1 |
12-4/M82 | 0.95108 | 1 |
1-3/M82 | 0.89169 | 0.378 |
2-1-1/M82 | 1.01513 | 1 |
2-1/M82 | 0.95985 | |
2-6/M82 | 0.95287 | 1 |
3-2/M82 | 1.02307 | 1 |
4-1-1/M82 | 0.90896 | 1 |
4-1/M82 | 1.05972 | 1 |
4-3-2/M82 | 1.05375 | 1 |
4-3/M82 | 0.94152 | 1 |
5-3/M82 | 1.12357 | 1 |
6-2/M82 | 1.04764 | 1 |
6-3/M82 | 1.06047 | 1 |
7-1/M82 | 0.94563 | 1 |
7-2/M82 | 0.92586 | 0.578 |
9-3-2/M82 | 1.02636 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.07474 | 0.493 |
IL2-6/WTpooled | 1.31292 | 0.395 |
IL7-5/WTpooled | 0.88174 | 1 |
IL7-3/WTpooled | 0.83052 | 0.294 |
IL12-4/WTpooled | 0.82882 | 0.71 |
IL1-4/WTpooled | 1.01348 | 1 |
WT/WTpooled | 0.90386 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.08179 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03925 | 0.921 |
DC3000/delta hrp 6h | 1.03186 | 0.95 |
DC3000/delta hrp 12h | 1.06274 | 1 |
DC3000/delta hrp 24h | 1.09634 | 0.422 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.32488 | 0.048 |
DC3000 delta B/DC3000 delta AB | 1.27774 | 0.193 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.95781 | 1 |
Exp 36h | 1.24863 | 0.693 |
Exp 60h | 1.2052 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03035 | 1 |
Var 0h | 1.26105 | 0.305 |
Var 12h I row2-row1 | 1.04656 | 0.263 |
Var 12h NI row2-row1 | 0.99931 | 1 |
Var 36h I row2-row1 | 1.0847 | 1 |
Var 36h NI row2-row1 | 0.8311 | 0.549 |
Var 60h I row2-row1 | 0.79975 | 0.439 |
Var 60h NI row2-row1 | 0.91446 | 0.932 |
Time course 0hI-0hNI | 1.02088 | 0.833 |
Time course 12hI-12hNI | 1.09236 | 0.398 |
Time course 36hI-36hNI | 1.61374 | 0.006 |
Time course 60hI-60hNI | 2.34065 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.05066 | 0.325 |
transgenic ySAMdc/azygous control (breaker) | 1.156 | 1 |
transgenic ySAMdc/azygous control (red) | 1.07741 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95941 | 0.092 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.92939 | 1 |
Manapal/WT (break) | 1.1535 | 0.381 |
Manapal/WT (red) | 1.10333 | 0.413 |
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