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Expression of 1-1-1.1.9.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.12870.681
27DAP/17DAP1.24160.788
39DAP/27DAP0.969810.733
41DAP/39DAP0.98090.883
42DAP/41DAP0.957881
43DAP/42DAP1.121910.974
47DAP/43DAP1.098870.769
52DAP/47DAP0.788170.455
57DAP/52DAP1.039540.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.070710.265
17DAP/reference1.075710.012
27DAP/reference1.010181
39DAP/reference1.076870.497
41DAP/reference1.130620.079
42DAP/reference1.124330.037
43DAP/reference0.9870.785
47DAP/reference1.089350.009
52DAP/reference1.06340.354
57DAP/reference1.038570.496

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.023760.841
27DAP/17DAP1.065220.78
39DAP/27DAP1.047310.663
41DAP/39DAP0.972050.968
42DAP/41DAP1.083790.694
43DAP/42DAP0.948170.558
47DAP/43DAP1.038020.844
52DAP/47DAP0.985840.935
57DAP/52DAP0.983960.763
57DAP/7DAP1.247280.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.891650.183
17DAP/reference0.904180.056
27DAP/reference0.861360.013
39DAP/reference0.788390.011
41DAP/reference0.872460.032
42DAP/reference0.86460.032
43DAP/reference0.854950.035
47DAP/reference0.81230.222
52DAP/reference0.762290.027
57DAP/reference0.885050.052

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.181250.062
17DAP/reference1.215980.038
27DAP/reference1.103730.692
39DAP/reference1.229450.136
41DAP/reference0.916420.441
42DAP/reference1.105770.649
43DAP/reference1.138270.105
47DAP/reference1.31420.046
52DAP/reference1.227590.014
57DAP/reference1.233770.057

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.910460.268
17DAP/reference1.13310.496
27DAP/reference0.881520.147
39DAP/reference0.916920.271
41DAP/reference1.015730.754
42DAP/reference0.981150.671
43DAP/reference0.986770.712
47DAP/reference1.17940.06
52DAP/reference0.97860.704
57DAP/reference1.007961

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.025551
26DAP/20DAP1.039790.875
34DAP/26DAP1.060180.819
51DAP/34DAP0.910270.498
52DAP/51DAP1.056790.51
53DAP/52DAP0.820990.64
55DAP/53DAP0.911950.648
57DAP/55DAP1.268950.643
62DAP/57DAP0.968580.994
68DAP/62DAP0.918820.464
68DAP/14DAP0.781531

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.35360.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.788090.265
Mature Green Tomato/Ripe Tomato0.815680.2
Immature Eggplant/Mature Eggplant1.124640.267
Ripe Pepper/Ripe Tomato1.125841
Mature Eggplant/Ripe Tomato1.022441

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.978120.944
1-1-2/M821.025781
12-2/M821.087771
12-4/M820.951081
1-3/M820.891690.378
2-1-1/M821.015131
2-1/M820.95985N/A
2-6/M820.952871
3-2/M821.023071
4-1-1/M820.908961
4-1/M821.059721
4-3-2/M821.053751
4-3/M820.941521
5-3/M821.123571
6-2/M821.047641
6-3/M821.060471
7-1/M820.945631
7-2/M820.925860.578
9-3-2/M821.026361

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.074740.493
IL2-6/WTpooled1.312920.395
IL7-5/WTpooled0.881741
IL7-3/WTpooled0.830520.294
IL12-4/WTpooled0.828820.71
IL1-4/WTpooled1.013481
WT/WTpooled0.903861

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.081790.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.039250.921
DC3000/delta hrp 6h1.031860.95
DC3000/delta hrp 12h1.062741
DC3000/delta hrp 24h1.096340.422

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.324880.048
DC3000 delta B/DC3000 delta AB1.277740.193

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.957811
Exp 36h1.248630.693
Exp 60h1.20520.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.030351
Var 0h1.261050.305
Var 12h I row2-row11.046560.263
Var 12h NI row2-row10.999311
Var 36h I row2-row11.08471
Var 36h NI row2-row10.83110.549
Var 60h I row2-row10.799750.439
Var 60h NI row2-row10.914460.932
Time course 0hI-0hNI1.020880.833
Time course 12hI-12hNI1.092360.398
Time course 36hI-36hNI1.613740.006
Time course 60hI-60hNI2.340650.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.050660.325
transgenic ySAMdc/azygous control (breaker)1.1561
transgenic ySAMdc/azygous control (red)1.077410.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.959410.092

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.929391
Manapal/WT (break)1.15350.381
Manapal/WT (red)1.103330.413