Expression of 1-1-1.2.1.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.6583 | 0.162 |
27DAP/17DAP | 1.26796 | 0.829 |
39DAP/27DAP | 0.80473 | 0.512 |
41DAP/39DAP | 0.97802 | 0.909 |
42DAP/41DAP | 1.26583 | 0.832 |
43DAP/42DAP | 1.1492 | 0.91 |
47DAP/43DAP | 1.21473 | 0.715 |
52DAP/47DAP | 0.91435 | 0.742 |
57DAP/52DAP | 0.75925 | 0.754 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87096 | 0.111 |
17DAP/reference | 1.03271 | 0.546 |
27DAP/reference | 1.04533 | 0.599 |
39DAP/reference | 0.87095 | 0.064 |
41DAP/reference | 0.83917 | 0.014 |
42DAP/reference | 0.99551 | 0.517 |
43DAP/reference | 0.98061 | 0.691 |
47DAP/reference | 1.04659 | 0.558 |
52DAP/reference | 0.9973 | 0.654 |
57DAP/reference | 0.96469 | 0.415 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.63486 | 0.455 |
27DAP/17DAP | 0.91704 | 0.854 |
39DAP/27DAP | 0.74296 | 0.279 |
41DAP/39DAP | 1.10612 | 0.79 |
42DAP/41DAP | 0.85841 | 0.303 |
43DAP/42DAP | 1.11804 | 0.478 |
47DAP/43DAP | 1.13758 | 0.713 |
52DAP/47DAP | 0.88556 | 0.671 |
57DAP/52DAP | 1.35732 | 0.451 |
57DAP/7DAP | 3.17711 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89084 | 0.078 |
17DAP/reference | 1.0142 | 0.971 |
27DAP/reference | 0.91225 | 0.135 |
39DAP/reference | 0.97471 | 0.474 |
41DAP/reference | 0.91828 | 0.133 |
42DAP/reference | 0.92723 | 0.178 |
43DAP/reference | 0.8091 | 0.031 |
47DAP/reference | 1.01062 | 1 |
52DAP/reference | 0.82109 | 0.053 |
57DAP/reference | 1.19499 | 0.41 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90041 | 0.329 |
17DAP/reference | 0.84508 | 0.049 |
27DAP/reference | 0.95001 | 0.257 |
39DAP/reference | 1.02429 | 1 |
41DAP/reference | 1.01225 | 1 |
42DAP/reference | 0.96854 | 0.392 |
43DAP/reference | 0.96083 | 0.539 |
47DAP/reference | 0.8785 | 0.026 |
52DAP/reference | 0.95329 | 0.259 |
57DAP/reference | 1.00388 | 0.789 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93812 | 0.335 |
17DAP/reference | 1.09254 | 0.398 |
27DAP/reference | 1.16722 | 0.727 |
39DAP/reference | 0.8427 | 0.076 |
41DAP/reference | 1.03205 | 1 |
42DAP/reference | 1.02524 | 0.979 |
43DAP/reference | 1.06965 | 0.555 |
47DAP/reference | 0.98141 | 0.558 |
52DAP/reference | 1.02696 | 0.928 |
57DAP/reference | 1.11485 | 0.268 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.59682 | 0.966 |
26DAP/20DAP | 1.47657 | 0.162 |
34DAP/26DAP | 1.5532 | 0.819 |
51DAP/34DAP | 1.09669 | 0.869 |
52DAP/51DAP | 1.70973 | 0.454 |
53DAP/52DAP | 1.07212 | 0.91 |
55DAP/53DAP | 0.83108 | 0.417 |
57DAP/55DAP | 0.7726 | 0.135 |
62DAP/57DAP | 1.11668 | 0.833 |
68DAP/62DAP | 2.70334 | 0.383 |
68DAP/14DAP | 1.34238 | 0.279 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.78062 | 0.239 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.79648 | 0.274 |
Mature Green Tomato/Ripe Tomato | 1.05103 | 0.898 |
Immature Eggplant/Mature Eggplant | 0.86547 | 0.366 |
Ripe Pepper/Ripe Tomato | 0.97094 | 1 |
Mature Eggplant/Ripe Tomato | 1.04608 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.0127 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.0699 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 0.79743 | |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.86688 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.93794 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.88138 | 1 |
IL2-6/WTpooled | 0.99552 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.82108 | 1 |
IL12-4/WTpooled | 0.95196 | |
IL1-4/WTpooled | 1.22654 | 1 |
WT/WTpooled | 1.15372 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.74874 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05103 | 0.692 |
DC3000/delta hrp 6h | 0.97715 | 0.95 |
DC3000/delta hrp 12h | 1.05939 | |
DC3000/delta hrp 24h | 0.95659 | 0.736 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.94088 | 1 |
Exp 36h | 1.22922 | 0.489 |
Exp 60h | 1.10038 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.92622 | 1 |
Var 0h | 1.45438 | 0.98 |
Var 12h I row2-row1 | 0.88983 | 0.418 |
Var 12h NI row2-row1 | 1.13864 | 0.649 |
Var 36h I row2-row1 | 1.04057 | 0.742 |
Var 36h NI row2-row1 | 1.51407 | 1 |
Var 60h I row2-row1 | 0.8471 | 0.374 |
Var 60h NI row2-row1 | 1.0888 | 0.904 |
Time course 0hI-0hNI | 2.23231 | 0.852 |
Time course 12hI-12hNI | 0.95185 | 0.551 |
Time course 36hI-36hNI | 0.87515 | 0.198 |
Time course 60hI-60hNI | 0.45902 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.92345 | 0.428 |
transgenic ySAMdc/azygous control (breaker) | 0.99027 | 1 |
transgenic ySAMdc/azygous control (red) | 1.00023 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02042 | 0.525 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.9296 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.21562 | 0.105 |
Manapal/WT (break) | 1.21743 | 1 |
Manapal/WT (red) | 1.1607 | 0.137 |
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