Expression of 1-1-1.2.1.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.246410.281
27DAP/17DAP1.287260.721
39DAP/27DAP1.778590.054
41DAP/39DAP0.608220.065
42DAP/41DAP1.005781
43DAP/42DAP1.197740.993
47DAP/43DAP1.304880.633
52DAP/47DAP0.855670.612
57DAP/52DAP1.256540.946

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.111250.303
17DAP/reference0.972460.664
27DAP/reference1.256070.033
39DAP/reference1.258150.048
41DAP/reference1.302970.093
42DAP/reference1.4680.001
43DAP/reference1.427110.061
47DAP/reference2.091960.001
52DAP/reference1.129950.121
57DAP/reference1.266480.031

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.165490.319
27DAP/17DAP0.978360.919
39DAP/27DAP0.995961
41DAP/39DAP1.208330.753
42DAP/41DAP0.894860.335
43DAP/42DAP0.974830.751
47DAP/43DAP0.984790.928
52DAP/47DAP0.935810.603
57DAP/52DAP1.066861
57DAP/7DAP1.763630.204

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.545090.039
17DAP/reference1.217430.022
27DAP/reference1.774510.007
39DAP/reference1.789420.005
41DAP/reference1.800610.008
42DAP/reference2.052250.007
43DAP/reference1.956020.007
47DAP/reference1.972580.014
52DAP/reference2.388950.007
57DAP/reference2.16870.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.931510.457
17DAP/reference1.399350.056
27DAP/reference1.454760.023
39DAP/reference1.614250.012
41DAP/reference1.519820.024
42DAP/reference1.380850.011
43DAP/reference1.30520.149
47DAP/reference1.559620.008
52DAP/reference1.426990.006
57DAP/reference1.123160.916

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.32180.034
17DAP/reference1.168830.503
27DAP/reference1.503110.019
39DAP/reference1.607710.014
41DAP/reference1.61150.01
42DAP/reference1.742940.007
43DAP/reference2.013630.006
47DAP/reference1.586460.009
52DAP/reference1.737820.036
57DAP/reference1.727150.009

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.370190.56
26DAP/20DAP0.994031
34DAP/26DAP1.132780.819
51DAP/34DAP1.023950.84
52DAP/51DAP0.756870.079
53DAP/52DAP1.322530.063
55DAP/53DAP1.004670.917
57DAP/55DAP1.054950.854
62DAP/57DAP0.998380.994
68DAP/62DAP0.802820.609
68DAP/14DAP1.169280.889

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.242180.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.59670.13
Mature Green Tomato/Ripe Tomato1.404260.106
Immature Eggplant/Mature Eggplant1.214390.248
Ripe Pepper/Ripe Tomato0.971351
Mature Eggplant/Ripe Tomato0.52180.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.063991
1-1-2/M821.132131
12-2/M820.782190.496
12-4/M821.119211
1-3/M822.013290.248
2-1-1/M820.856480.683
2-1/M820.721390.325
2-6/M821.010950.425
3-2/M820.808950.455
4-1-1/M821.109151
4-1/M821.84063
4-3-2/M821.75704
4-3/M821.070611
5-3/M821.068150.496
6-2/M820.962721
6-3/M821.009371
7-1/M82N/AN/A
7-2/M821.152021
9-3-2/M821.454321

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.604720.321
IL2-6/WTpooled0.917851
IL7-5/WTpooled0.37462
IL7-3/WTpooled0.909771
IL12-4/WTpooled1.142440.839
IL1-4/WTpooled0.825670.444
WT/WTpooled1.005221

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.256090.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.016791
DC3000/delta hrp 6h0.999340.95
DC3000/delta hrp 12h1.05671
DC3000/delta hrp 24h1.234530.151

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.047230.556
DC3000 delta B/DC3000 delta AB1.082780.558

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.137381
Exp 36h1.177791
Exp 60h1.034441

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.020181
Var 0h3.394950.98
Var 12h I row2-row10.880620.467
Var 12h NI row2-row11.135330.649
Var 36h I row2-row11.156970.742
Var 36h NI row2-row10.822180.61
Var 60h I row2-row10.945680.952
Var 60h NI row2-row10.767890.292
Time course 0hI-0hNI1.032220.852
Time course 12hI-12hNI0.984680.931
Time course 36hI-36hNI1.047850.453
Time course 60hI-60hNI1.651720.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.777530.295
transgenic ySAMdc/azygous control (breaker)0.839670.173
transgenic ySAMdc/azygous control (red)0.998311

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.89540.196

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.584110.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.778860.172
Manapal/WT (break)0.834691
Manapal/WT (red)1.133490.164