Expression of 1-1-1.2.1.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.24641 | 0.281 |
27DAP/17DAP | 1.28726 | 0.721 |
39DAP/27DAP | 1.77859 | 0.054 |
41DAP/39DAP | 0.60822 | 0.065 |
42DAP/41DAP | 1.00578 | 1 |
43DAP/42DAP | 1.19774 | 0.993 |
47DAP/43DAP | 1.30488 | 0.633 |
52DAP/47DAP | 0.85567 | 0.612 |
57DAP/52DAP | 1.25654 | 0.946 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11125 | 0.303 |
17DAP/reference | 0.97246 | 0.664 |
27DAP/reference | 1.25607 | 0.033 |
39DAP/reference | 1.25815 | 0.048 |
41DAP/reference | 1.30297 | 0.093 |
42DAP/reference | 1.468 | 0.001 |
43DAP/reference | 1.42711 | 0.061 |
47DAP/reference | 2.09196 | 0.001 |
52DAP/reference | 1.12995 | 0.121 |
57DAP/reference | 1.26648 | 0.031 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.16549 | 0.319 |
27DAP/17DAP | 0.97836 | 0.919 |
39DAP/27DAP | 0.99596 | 1 |
41DAP/39DAP | 1.20833 | 0.753 |
42DAP/41DAP | 0.89486 | 0.335 |
43DAP/42DAP | 0.97483 | 0.751 |
47DAP/43DAP | 0.98479 | 0.928 |
52DAP/47DAP | 0.93581 | 0.603 |
57DAP/52DAP | 1.06686 | 1 |
57DAP/7DAP | 1.76363 | 0.204 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.54509 | 0.039 |
17DAP/reference | 1.21743 | 0.022 |
27DAP/reference | 1.77451 | 0.007 |
39DAP/reference | 1.78942 | 0.005 |
41DAP/reference | 1.80061 | 0.008 |
42DAP/reference | 2.05225 | 0.007 |
43DAP/reference | 1.95602 | 0.007 |
47DAP/reference | 1.97258 | 0.014 |
52DAP/reference | 2.38895 | 0.007 |
57DAP/reference | 2.1687 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93151 | 0.457 |
17DAP/reference | 1.39935 | 0.056 |
27DAP/reference | 1.45476 | 0.023 |
39DAP/reference | 1.61425 | 0.012 |
41DAP/reference | 1.51982 | 0.024 |
42DAP/reference | 1.38085 | 0.011 |
43DAP/reference | 1.3052 | 0.149 |
47DAP/reference | 1.55962 | 0.008 |
52DAP/reference | 1.42699 | 0.006 |
57DAP/reference | 1.12316 | 0.916 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.3218 | 0.034 |
17DAP/reference | 1.16883 | 0.503 |
27DAP/reference | 1.50311 | 0.019 |
39DAP/reference | 1.60771 | 0.014 |
41DAP/reference | 1.6115 | 0.01 |
42DAP/reference | 1.74294 | 0.007 |
43DAP/reference | 2.01363 | 0.006 |
47DAP/reference | 1.58646 | 0.009 |
52DAP/reference | 1.73782 | 0.036 |
57DAP/reference | 1.72715 | 0.009 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.37019 | 0.56 |
26DAP/20DAP | 0.99403 | 1 |
34DAP/26DAP | 1.13278 | 0.819 |
51DAP/34DAP | 1.02395 | 0.84 |
52DAP/51DAP | 0.75687 | 0.079 |
53DAP/52DAP | 1.32253 | 0.063 |
55DAP/53DAP | 1.00467 | 0.917 |
57DAP/55DAP | 1.05495 | 0.854 |
62DAP/57DAP | 0.99838 | 0.994 |
68DAP/62DAP | 0.80282 | 0.609 |
68DAP/14DAP | 1.16928 | 0.889 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.24218 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.5967 | 0.13 |
Mature Green Tomato/Ripe Tomato | 1.40426 | 0.106 |
Immature Eggplant/Mature Eggplant | 1.21439 | 0.248 |
Ripe Pepper/Ripe Tomato | 0.97135 | 1 |
Mature Eggplant/Ripe Tomato | 0.5218 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.06399 | 1 |
1-1-2/M82 | 1.13213 | 1 |
12-2/M82 | 0.78219 | 0.496 |
12-4/M82 | 1.11921 | 1 |
1-3/M82 | 2.01329 | 0.248 |
2-1-1/M82 | 0.85648 | 0.683 |
2-1/M82 | 0.72139 | 0.325 |
2-6/M82 | 1.01095 | 0.425 |
3-2/M82 | 0.80895 | 0.455 |
4-1-1/M82 | 1.10915 | 1 |
4-1/M82 | 1.84063 | |
4-3-2/M82 | 1.75704 | |
4-3/M82 | 1.07061 | 1 |
5-3/M82 | 1.06815 | 0.496 |
6-2/M82 | 0.96272 | 1 |
6-3/M82 | 1.00937 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.15202 | 1 |
9-3-2/M82 | 1.45432 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.60472 | 0.321 |
IL2-6/WTpooled | 0.91785 | 1 |
IL7-5/WTpooled | 0.37462 | |
IL7-3/WTpooled | 0.90977 | 1 |
IL12-4/WTpooled | 1.14244 | 0.839 |
IL1-4/WTpooled | 0.82567 | 0.444 |
WT/WTpooled | 1.00522 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.25609 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01679 | 1 |
DC3000/delta hrp 6h | 0.99934 | 0.95 |
DC3000/delta hrp 12h | 1.0567 | 1 |
DC3000/delta hrp 24h | 1.23453 | 0.151 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.04723 | 0.556 |
DC3000 delta B/DC3000 delta AB | 1.08278 | 0.558 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.13738 | 1 |
Exp 36h | 1.17779 | 1 |
Exp 60h | 1.03444 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.02018 | 1 |
Var 0h | 3.39495 | 0.98 |
Var 12h I row2-row1 | 0.88062 | 0.467 |
Var 12h NI row2-row1 | 1.13533 | 0.649 |
Var 36h I row2-row1 | 1.15697 | 0.742 |
Var 36h NI row2-row1 | 0.82218 | 0.61 |
Var 60h I row2-row1 | 0.94568 | 0.952 |
Var 60h NI row2-row1 | 0.76789 | 0.292 |
Time course 0hI-0hNI | 1.03222 | 0.852 |
Time course 12hI-12hNI | 0.98468 | 0.931 |
Time course 36hI-36hNI | 1.04785 | 0.453 |
Time course 60hI-60hNI | 1.65172 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.77753 | 0.295 |
transgenic ySAMdc/azygous control (breaker) | 0.83967 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.99831 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.8954 | 0.196 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.58411 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.77886 | 0.172 |
Manapal/WT (break) | 0.83469 | 1 |
Manapal/WT (red) | 1.13349 | 0.164 |
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