Tomato Functional Genomics Database (TFGD)

Expression of 1-1-1.2.1.5

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	2.07247	0.211
27DAP/17DAP	1.69159	0.688
39DAP/27DAP	0.65847	0.392
41DAP/39DAP	1.01809	0.964
42DAP/41DAP	1.70831	0.777
43DAP/42DAP	1.60367	0.619
47DAP/43DAP	1.49223	0.647
52DAP/47DAP	0.85344	0.675
57DAP/52DAP	1.32678	0.93

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	N/A	N/A
17DAP/reference	N/A	N/A
27DAP/reference	0.62036
39DAP/reference	N/A	N/A
41DAP/reference	1.13935
42DAP/reference	1.38545	0.159
43DAP/reference	0.78057
47DAP/reference	4.29355	0.001
52DAP/reference	1.1377
57DAP/reference	0.46038	0.065

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.71565	0.153
27DAP/17DAP	1.37321	0.836
39DAP/27DAP	1.11615	0.496
41DAP/39DAP	1.43214	0.579
42DAP/41DAP	1.58531	0.947
43DAP/42DAP	1.00126	0.96
47DAP/43DAP	1.5895	0.276
52DAP/47DAP	1.26053	0.524
57DAP/52DAP	0.92094	0.528
57DAP/7DAP	N/A	N/A

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.7597	0.06
17DAP/reference	0.8598	0.082
27DAP/reference	1.13844	0.026
39DAP/reference	1.36493	0.12
41DAP/reference	1.23264	0.093
42DAP/reference	1.10841	0.686
43DAP/reference	0.82806	0.049
47DAP/reference	0.80985	0.101
52DAP/reference	0.88522	0.115
57DAP/reference	0.87334	0.028

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.57039
17DAP/reference	0.86878
27DAP/reference	0.715
39DAP/reference	N/A	N/A
41DAP/reference	N/A	N/A
42DAP/reference	0.43613
43DAP/reference	1.20479	0.977
47DAP/reference	0.86901	0.253
52DAP/reference	0.6786	0.005
57DAP/reference	0.12213

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.78462	0.038
17DAP/reference	0.92648	0.488
27DAP/reference	0.69814	0.03
39DAP/reference	0.78335	0.033
41DAP/reference	0.81283	0.025
42DAP/reference	0.96995	0.671
43DAP/reference	0.78837	0.03
47DAP/reference	0.51213
52DAP/reference	0.75883	0.155
57DAP/reference	0.3659	0.18

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.9982
26DAP/20DAP	N/A	N/A
34DAP/26DAP	2.72113	0.542
51DAP/34DAP	N/A	N/A
52DAP/51DAP	1.03911	1
53DAP/52DAP	1.02696	1
55DAP/53DAP	2.3018	0.671
57DAP/55DAP	0.82293	0.644
62DAP/57DAP	0.71753
68DAP/62DAP	N/A	N/A
68DAP/14DAP	1.10149	0.694

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.97372	0.635

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.78417	0.321
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	1.19781	1
IL7-3/WTpooled	N/A	N/A
IL12-4/WTpooled	0.40316
IL1-4/WTpooled	1.04695	1
WT/WTpooled	1.03195

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A