Expression of 1-1-1.2.1.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.20885 | 0.752 |
27DAP/17DAP | 1.42044 | 0.791 |
39DAP/27DAP | 1.51576 | 0.864 |
41DAP/39DAP | 1.03692 | 0.811 |
42DAP/41DAP | 0.86255 | 1 |
43DAP/42DAP | 1.96766 | 0.475 |
47DAP/43DAP | 0.89086 | 0.645 |
52DAP/47DAP | 1.54257 | 0.445 |
57DAP/52DAP | 0.80172 | 0.839 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88898 | 0.027 |
17DAP/reference | 0.95343 | |
27DAP/reference | N/A | N/A |
39DAP/reference | 0.01167 | |
41DAP/reference | 0.28553 | |
42DAP/reference | 1.10539 | 0.731 |
43DAP/reference | 0.58556 | |
47DAP/reference | 1.1997 | 0.72 |
52DAP/reference | 0.70931 | 0.31 |
57DAP/reference | 0.7974 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96156 | 0.782 |
27DAP/17DAP | 1.30012 | 0.681 |
39DAP/27DAP | N/A | N/A |
41DAP/39DAP | 1.57348 | |
42DAP/41DAP | 2.19428 | 0.011 |
43DAP/42DAP | 1.01375 | 1 |
47DAP/43DAP | N/A | N/A |
52DAP/47DAP | 1.26898 | |
57DAP/52DAP | N/A | N/A |
57DAP/7DAP | N/A | N/A |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86142 | 0.115 |
17DAP/reference | 0.8374 | 0.044 |
27DAP/reference | 0.93734 | 0.062 |
39DAP/reference | 0.73554 | 0.011 |
41DAP/reference | 0.72557 | 0.015 |
42DAP/reference | 0.85771 | 0.017 |
43DAP/reference | 0.7009 | 0.011 |
47DAP/reference | 0.69839 | 0.019 |
52DAP/reference | 0.62493 | 0.011 |
57DAP/reference | 0.62046 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.55279 | 0.384 |
17DAP/reference | 1.06653 | 0.851 |
27DAP/reference | 0.86483 | |
39DAP/reference | 1.0891 | 0.848 |
41DAP/reference | 0.42544 | |
42DAP/reference | N/A | N/A |
43DAP/reference | 1.3511 | 0.751 |
47DAP/reference | N/A | N/A |
52DAP/reference | 1.6264 | 0.223 |
57DAP/reference | 1.20942 | 0.523 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.80251 | 0.032 |
17DAP/reference | 0.96247 | 0.658 |
27DAP/reference | 0.69267 | 0.031 |
39DAP/reference | 1.06299 | 0.643 |
41DAP/reference | 0.91662 | 0.055 |
42DAP/reference | 0.91622 | 0.172 |
43DAP/reference | 0.78736 | 0.034 |
47DAP/reference | N/A | N/A |
52DAP/reference | 0.67561 | 0.066 |
57DAP/reference | 0.46667 | |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.71143 | 0.036 |
26DAP/20DAP | 1.71748 | |
34DAP/26DAP | 1.58517 | 0.047 |
51DAP/34DAP | 1.33085 | |
52DAP/51DAP | 1.57847 | |
53DAP/52DAP | 0.92556 | 0.835 |
55DAP/53DAP | 1.31915 | 0.981 |
57DAP/55DAP | N/A | N/A |
62DAP/57DAP | 1.45143 | |
68DAP/62DAP | 2.84249 | |
68DAP/14DAP | 1.21319 | 0.762 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.18291 | 0.737 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.26859 | 0.277 |
IL2-6/WTpooled | 1.13308 | 0.584 |
IL7-5/WTpooled | 0.99241 | 1 |
IL7-3/WTpooled | 0.97258 | 1 |
IL12-4/WTpooled | 0.99496 | 1 |
IL1-4/WTpooled | 0.95445 | 1 |
WT/WTpooled | 1.08791 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | 0.68826 | 0.68 |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | N/A | N/A |
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