Expression of 1-1-1.2.1.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.208850.752
27DAP/17DAP1.420440.791
39DAP/27DAP1.515760.864
41DAP/39DAP1.036920.811
42DAP/41DAP0.862551
43DAP/42DAP1.967660.475
47DAP/43DAP0.890860.645
52DAP/47DAP1.542570.445
57DAP/52DAP0.801720.839

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.888980.027
17DAP/reference0.95343
27DAP/referenceN/AN/A
39DAP/reference0.01167
41DAP/reference0.28553
42DAP/reference1.105390.731
43DAP/reference0.58556
47DAP/reference1.19970.72
52DAP/reference0.709310.31
57DAP/reference0.7974

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.961560.782
27DAP/17DAP1.300120.681
39DAP/27DAPN/AN/A
41DAP/39DAP1.57348
42DAP/41DAP2.194280.011
43DAP/42DAP1.013751
47DAP/43DAPN/AN/A
52DAP/47DAP1.26898
57DAP/52DAPN/AN/A
57DAP/7DAPN/AN/A

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.861420.115
17DAP/reference0.83740.044
27DAP/reference0.937340.062
39DAP/reference0.735540.011
41DAP/reference0.725570.015
42DAP/reference0.857710.017
43DAP/reference0.70090.011
47DAP/reference0.698390.019
52DAP/reference0.624930.011
57DAP/reference0.620460.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.552790.384
17DAP/reference1.066530.851
27DAP/reference0.86483
39DAP/reference1.08910.848
41DAP/reference0.42544
42DAP/referenceN/AN/A
43DAP/reference1.35110.751
47DAP/referenceN/AN/A
52DAP/reference1.62640.223
57DAP/reference1.209420.523

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.802510.032
17DAP/reference0.962470.658
27DAP/reference0.692670.031
39DAP/reference1.062990.643
41DAP/reference0.916620.055
42DAP/reference0.916220.172
43DAP/reference0.787360.034
47DAP/referenceN/AN/A
52DAP/reference0.675610.066
57DAP/reference0.46667

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.711430.036
26DAP/20DAP1.71748
34DAP/26DAP1.585170.047
51DAP/34DAP1.33085
52DAP/51DAP1.57847
53DAP/52DAP0.925560.835
55DAP/53DAP1.319150.981
57DAP/55DAPN/AN/A
62DAP/57DAP1.45143
68DAP/62DAP2.84249
68DAP/14DAP1.213190.762

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.182910.737

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.268590.277
IL2-6/WTpooled1.133080.584
IL7-5/WTpooled0.992411
IL7-3/WTpooled0.972581
IL12-4/WTpooled0.994961
IL1-4/WTpooled0.954451
WT/WTpooled1.087911

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6h0.688260.68
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A