Expression of 1-1-1.2.10.20
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.09852 | 0.646 |
27DAP/17DAP | 1.05412 | 0.902 |
39DAP/27DAP | 0.91842 | 0.529 |
41DAP/39DAP | 0.90227 | 0.571 |
42DAP/41DAP | 0.95795 | 1 |
43DAP/42DAP | 0.95561 | 0.883 |
47DAP/43DAP | 1.06549 | 0.842 |
52DAP/47DAP | 0.97382 | 0.907 |
57DAP/52DAP | 1.01414 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04617 | 0.846 |
17DAP/reference | 0.98512 | 0.597 |
27DAP/reference | 0.94861 | 0.101 |
39DAP/reference | 0.97223 | 0.333 |
41DAP/reference | 1.02073 | 0.624 |
42DAP/reference | 0.98858 | 0.384 |
43DAP/reference | 0.96156 | 0.394 |
47DAP/reference | 1.04104 | 0.223 |
52DAP/reference | 1.03659 | 0.407 |
57DAP/reference | 0.98393 | 0.526 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02921 | 0.736 |
27DAP/17DAP | 1.08167 | |
39DAP/27DAP | 0.96566 | 0.601 |
41DAP/39DAP | 1.01698 | 0.88 |
42DAP/41DAP | 1.02685 | 0.795 |
43DAP/42DAP | 1.00334 | 0.83 |
47DAP/43DAP | 1.02567 | 0.817 |
52DAP/47DAP | 1.00231 | 1 |
57DAP/52DAP | 1.04713 | 0.726 |
57DAP/7DAP | 1.06232 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99669 | 0.758 |
17DAP/reference | 1.01585 | 0.754 |
27DAP/reference | 1.00749 | 0.664 |
39DAP/reference | 0.99537 | 0.745 |
41DAP/reference | 0.96707 | 0.146 |
42DAP/reference | 0.98379 | 0.415 |
43DAP/reference | 0.95341 | 0.061 |
47DAP/reference | 1.02595 | 0.717 |
52DAP/reference | 0.94843 | 0.137 |
57DAP/reference | 1.03089 | 0.851 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95992 | 0.548 |
17DAP/reference | 0.99198 | 0.659 |
27DAP/reference | 1.13123 | 0.404 |
39DAP/reference | 1.02999 | 0.978 |
41DAP/reference | 0.98575 | 0.545 |
42DAP/reference | 1.03624 | 0.744 |
43DAP/reference | 0.96623 | 0.569 |
47DAP/reference | 0.99878 | 0.79 |
52DAP/reference | 1.08012 | 0.194 |
57DAP/reference | 0.98849 | 0.68 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.01797 | 0.939 |
17DAP/reference | 1.06618 | 0.602 |
27DAP/reference | 0.97288 | 0.14 |
39DAP/reference | 1.00925 | 0.773 |
41DAP/reference | 1.04662 | 0.369 |
42DAP/reference | 1.02603 | 0.612 |
43DAP/reference | 1.10012 | 0.291 |
47DAP/reference | 1.02724 | 0.901 |
52DAP/reference | 1.05024 | 0.609 |
57DAP/reference | 1.03164 | 0.828 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.95156 | 1 |
26DAP/20DAP | 0.98698 | 1 |
34DAP/26DAP | 0.99277 | 1 |
51DAP/34DAP | 1.01775 | 0.814 |
52DAP/51DAP | 1.0225 | 0.733 |
53DAP/52DAP | N/A | N/A |
55DAP/53DAP | N/A | N/A |
57DAP/55DAP | 0.98004 | 0.899 |
62DAP/57DAP | 1.09149 | 0.868 |
68DAP/62DAP | 0.94581 | 0.769 |
68DAP/14DAP | 1.36937 | 0.594 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.97957 | 0.607 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.65472 | 0.167 |
Mature Green Tomato/Ripe Tomato | 1.17519 | 0.331 |
Immature Eggplant/Mature Eggplant | 0.88446 | 0.197 |
Ripe Pepper/Ripe Tomato | 3.41823 | 1 |
Mature Eggplant/Ripe Tomato | 1.8416 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.04927 | 1 |
1-1-2/M82 | 0.87776 | 0.958 |
12-2/M82 | 1.09308 | 1 |
12-4/M82 | 0.88958 | 0.619 |
1-3/M82 | 1.08086 | 0.277 |
2-1-1/M82 | 1.06174 | 0.764 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.00624 | 1 |
3-2/M82 | 1.03118 | 0.967 |
4-1-1/M82 | 1.03592 | 1 |
4-1/M82 | 1.08986 | 1 |
4-3-2/M82 | 0.90378 | 1 |
4-3/M82 | 0.8847 | 0.551 |
5-3/M82 | 1.06694 | 0.572 |
6-2/M82 | 1.04866 | 1 |
6-3/M82 | 1.00766 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | 1.19133 | 1 |
9-3-2/M82 | 1.1496 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.81593 | 0.243 |
IL2-6/WTpooled | 1.00494 | 1 |
IL7-5/WTpooled | 1.01535 | 1 |
IL7-3/WTpooled | 0.88188 | 0.298 |
IL12-4/WTpooled | 0.83038 | 0.71 |
IL1-4/WTpooled | 0.89665 | 0.444 |
WT/WTpooled | 0.98313 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.83099 | 0.256 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.98985 | 1 |
DC3000/delta hrp 6h | 1.06118 | 1 |
DC3000/delta hrp 12h | 1.02564 | |
DC3000/delta hrp 24h | 1.06898 | 0.553 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.24981 | 0.044 |
DC3000 delta B/DC3000 delta AB | 1.18945 | 0.215 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.13234 | 1 |
Exp 36h | 0.68881 | 0.471 |
Exp 60h | 0.72128 | 0.29 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01908 | 1 |
Var 0h | 0.94995 | 1 |
Var 12h I row2-row1 | 1.10313 | 0.263 |
Var 12h NI row2-row1 | 0.94334 | 0.713 |
Var 36h I row2-row1 | 0.98106 | 1 |
Var 36h NI row2-row1 | 0.92237 | 0.469 |
Var 60h I row2-row1 | 1.2651 | 1 |
Var 60h NI row2-row1 | 1.13168 | 0.904 |
Time course 0hI-0hNI | 1.06557 | 0.852 |
Time course 12hI-12hNI | 1.01923 | 0.854 |
Time course 36hI-36hNI | 0.97319 | 0.524 |
Time course 60hI-60hNI | 1.70237 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.91323 | 0.314 |
transgenic ySAMdc/azygous control (breaker) | 1.26603 | 0.172 |
transgenic ySAMdc/azygous control (red) | 1.02476 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.98031 | 0.27 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.34266 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 2.16001 | 0.088 |
Manapal/WT (break) | 1.50685 | 0.13 |
Manapal/WT (red) | 1.55733 | 0.413 |
|
|