Expression of 1-1-1.2.10.20

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.098520.646
27DAP/17DAP1.054120.902
39DAP/27DAP0.918420.529
41DAP/39DAP0.902270.571
42DAP/41DAP0.957951
43DAP/42DAP0.955610.883
47DAP/43DAP1.065490.842
52DAP/47DAP0.973820.907
57DAP/52DAP1.014141

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.046170.846
17DAP/reference0.985120.597
27DAP/reference0.948610.101
39DAP/reference0.972230.333
41DAP/reference1.020730.624
42DAP/reference0.988580.384
43DAP/reference0.961560.394
47DAP/reference1.041040.223
52DAP/reference1.036590.407
57DAP/reference0.983930.526

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.029210.736
27DAP/17DAP1.08167
39DAP/27DAP0.965660.601
41DAP/39DAP1.016980.88
42DAP/41DAP1.026850.795
43DAP/42DAP1.003340.83
47DAP/43DAP1.025670.817
52DAP/47DAP1.002311
57DAP/52DAP1.047130.726
57DAP/7DAP1.062320.365

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.996690.758
17DAP/reference1.015850.754
27DAP/reference1.007490.664
39DAP/reference0.995370.745
41DAP/reference0.967070.146
42DAP/reference0.983790.415
43DAP/reference0.953410.061
47DAP/reference1.025950.717
52DAP/reference0.948430.137
57DAP/reference1.030890.851

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.959920.548
17DAP/reference0.991980.659
27DAP/reference1.131230.404
39DAP/reference1.029990.978
41DAP/reference0.985750.545
42DAP/reference1.036240.744
43DAP/reference0.966230.569
47DAP/reference0.998780.79
52DAP/reference1.080120.194
57DAP/reference0.988490.68

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.017970.939
17DAP/reference1.066180.602
27DAP/reference0.972880.14
39DAP/reference1.009250.773
41DAP/reference1.046620.369
42DAP/reference1.026030.612
43DAP/reference1.100120.291
47DAP/reference1.027240.901
52DAP/reference1.050240.609
57DAP/reference1.031640.828

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.951561
26DAP/20DAP0.986981
34DAP/26DAP0.992771
51DAP/34DAP1.017750.814
52DAP/51DAP1.02250.733
53DAP/52DAPN/AN/A
55DAP/53DAPN/AN/A
57DAP/55DAP0.980040.899
62DAP/57DAP1.091490.868
68DAP/62DAP0.945810.769
68DAP/14DAP1.369370.594

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.979570.607

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.654720.167
Mature Green Tomato/Ripe Tomato1.175190.331
Immature Eggplant/Mature Eggplant0.884460.197
Ripe Pepper/Ripe Tomato3.418231
Mature Eggplant/Ripe Tomato1.8416

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.049271
1-1-2/M820.877760.958
12-2/M821.093081
12-4/M820.889580.619
1-3/M821.080860.277
2-1-1/M821.061740.764
2-1/M82N/AN/A
2-6/M821.006241
3-2/M821.031180.967
4-1-1/M821.035921
4-1/M821.089861
4-3-2/M820.903781
4-3/M820.88470.551
5-3/M821.066940.572
6-2/M821.048661
6-3/M821.007661
7-1/M82N/AN/A
7-2/M821.191331
9-3-2/M821.14961

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.815930.243
IL2-6/WTpooled1.004941
IL7-5/WTpooled1.015351
IL7-3/WTpooled0.881880.298
IL12-4/WTpooled0.830380.71
IL1-4/WTpooled0.896650.444
WT/WTpooled0.983131

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.830990.256

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.989851
DC3000/delta hrp 6h1.061181
DC3000/delta hrp 12h1.02564
DC3000/delta hrp 24h1.068980.553

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.249810.044
DC3000 delta B/DC3000 delta AB1.189450.215

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.132341
Exp 36h0.688810.471
Exp 60h0.721280.29

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.019081
Var 0h0.949951
Var 12h I row2-row11.103130.263
Var 12h NI row2-row10.943340.713
Var 36h I row2-row10.981061
Var 36h NI row2-row10.922370.469
Var 60h I row2-row11.26511
Var 60h NI row2-row11.131680.904
Time course 0hI-0hNI1.065570.852
Time course 12hI-12hNI1.019230.854
Time course 36hI-36hNI0.973190.524
Time course 60hI-60hNI1.702370.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.913230.314
transgenic ySAMdc/azygous control (breaker)1.266030.172
transgenic ySAMdc/azygous control (red)1.024760.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.980310.27

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.342660.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)2.160010.088
Manapal/WT (break)1.506850.13
Manapal/WT (red)1.557330.413