Expression of 1-1-1.2.10.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.020160.947
27DAP/17DAP1.043670.895
39DAP/27DAP0.781670.495
41DAP/39DAP1.077320.638
42DAP/41DAP0.931291
43DAP/42DAP1.160160.885
47DAP/43DAP0.945490.768
52DAP/47DAP0.909830.702
57DAP/52DAP1.009340.988

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.047340.544
17DAP/reference1.117960.014
27DAP/reference1.025550.612
39DAP/reference1.027170.734
41DAP/reference1.101670.085
42DAP/reference0.968820.259
43DAP/reference1.061250.126
47DAP/reference0.981810.445
52DAP/reference0.966080.449
57DAP/reference0.896270.131

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.038070.797
27DAP/17DAP1.002471
39DAP/27DAP1.008210.832
41DAP/39DAP1.018380.849
42DAP/41DAP1.042590.81
43DAP/42DAP1.019930.413
47DAP/43DAP1.03090.833
52DAP/47DAP0.92190.634
57DAP/52DAP0.968980.768
57DAP/7DAP1.03879

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.960190.129
17DAP/reference0.983730.295
27DAP/reference1.001381
39DAP/reference1.083570.05
41DAP/reference1.016970.918
42DAP/reference1.009870.889
43DAP/reference0.989680.266
47DAP/reference0.916520.128
52DAP/reference0.962290.398
57DAP/reference0.998910.748

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.020070.812
17DAP/reference1.053180.385
27DAP/reference0.886970.129
39DAP/reference0.982420.539
41DAP/reference0.90360.177
42DAP/reference0.940760.392
43DAP/reference1.039310.633
47DAP/reference1.018840.943
52DAP/reference0.991840.619
57DAP/reference1.042220.654

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.959530.082
17DAP/reference0.972270.624
27DAP/reference1.011130.934
39DAP/reference0.961420.133
41DAP/reference1.010711
42DAP/reference0.888650.22
43DAP/reference0.923190.267
47DAP/reference0.95240.396
52DAP/reference0.99590.888
57DAP/reference0.613450.045

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.114440.85
26DAP/20DAP0.936510.512
34DAP/26DAP0.980790.98
51DAP/34DAP0.961390.66
52DAP/51DAP1.020610.842
53DAP/52DAP0.906280.371
55DAP/53DAP1.181990.275
57DAP/55DAP0.984230.88
62DAP/57DAP1.155950.133
68DAP/62DAP1.043060.971
68DAP/14DAP0.992561

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.947880.322

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.67202
Mature Green Tomato/Ripe Tomato1.188630.523
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.05921
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.037030.742
1-1-2/M820.988181
12-2/M821.121331
12-4/M820.963611
1-3/M820.920010.501
2-1-1/M820.912130.92
2-1/M82N/AN/A
2-6/M821.011590.695
3-2/M820.962141
4-1-1/M820.842730.926
4-1/M820.959361
4-3-2/M820.906871
4-3/M820.932251
5-3/M820.920950.447
6-2/M820.967411
6-3/M821.117171
7-1/M820.98909
7-2/M821.008421
9-3-2/M820.944471

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.645420.365
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.76557
IL12-4/WTpooled0.94296
IL1-4/WTpooled1.003161
WT/WTpooled1.10587

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.169770.309

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.002651
DC3000/delta hrp 6h1.00040.95
DC3000/delta hrp 12h0.68663
DC3000/delta hrp 24h1.055360.383

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.125470.229
DC3000 delta B/DC3000 delta AB1.207390.177

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.059230.254
Exp 36h0.952990.406
Exp 60h0.965080.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.877991
Var 0h0.88820.933
Var 12h I row2-row11.066080.189
Var 12h NI row2-row11.050241
Var 36h I row2-row10.813971
Var 36h NI row2-row11.414521
Var 60h I row2-row11.303120.562
Var 60h NI row2-row11.096510.904
Time course 0hI-0hNI1.040760.852
Time course 12hI-12hNI0.993871
Time course 36hI-36hNI0.982420.601
Time course 60hI-60hNI1.043510.426

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.403060.408
transgenic ySAMdc/azygous control (breaker)2.870690.248
transgenic ySAMdc/azygous control (red)2.07630.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.010030.395

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.950170.431

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.759081
Manapal/WT (red)0.898630.229