Expression of 1-1-1.2.10.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02016 | 0.947 |
27DAP/17DAP | 1.04367 | 0.895 |
39DAP/27DAP | 0.78167 | 0.495 |
41DAP/39DAP | 1.07732 | 0.638 |
42DAP/41DAP | 0.93129 | 1 |
43DAP/42DAP | 1.16016 | 0.885 |
47DAP/43DAP | 0.94549 | 0.768 |
52DAP/47DAP | 0.90983 | 0.702 |
57DAP/52DAP | 1.00934 | 0.988 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04734 | 0.544 |
17DAP/reference | 1.11796 | 0.014 |
27DAP/reference | 1.02555 | 0.612 |
39DAP/reference | 1.02717 | 0.734 |
41DAP/reference | 1.10167 | 0.085 |
42DAP/reference | 0.96882 | 0.259 |
43DAP/reference | 1.06125 | 0.126 |
47DAP/reference | 0.98181 | 0.445 |
52DAP/reference | 0.96608 | 0.449 |
57DAP/reference | 0.89627 | 0.131 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03807 | 0.797 |
27DAP/17DAP | 1.00247 | 1 |
39DAP/27DAP | 1.00821 | 0.832 |
41DAP/39DAP | 1.01838 | 0.849 |
42DAP/41DAP | 1.04259 | 0.81 |
43DAP/42DAP | 1.01993 | 0.413 |
47DAP/43DAP | 1.0309 | 0.833 |
52DAP/47DAP | 0.9219 | 0.634 |
57DAP/52DAP | 0.96898 | 0.768 |
57DAP/7DAP | 1.03879 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96019 | 0.129 |
17DAP/reference | 0.98373 | 0.295 |
27DAP/reference | 1.00138 | 1 |
39DAP/reference | 1.08357 | 0.05 |
41DAP/reference | 1.01697 | 0.918 |
42DAP/reference | 1.00987 | 0.889 |
43DAP/reference | 0.98968 | 0.266 |
47DAP/reference | 0.91652 | 0.128 |
52DAP/reference | 0.96229 | 0.398 |
57DAP/reference | 0.99891 | 0.748 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02007 | 0.812 |
17DAP/reference | 1.05318 | 0.385 |
27DAP/reference | 0.88697 | 0.129 |
39DAP/reference | 0.98242 | 0.539 |
41DAP/reference | 0.9036 | 0.177 |
42DAP/reference | 0.94076 | 0.392 |
43DAP/reference | 1.03931 | 0.633 |
47DAP/reference | 1.01884 | 0.943 |
52DAP/reference | 0.99184 | 0.619 |
57DAP/reference | 1.04222 | 0.654 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95953 | 0.082 |
17DAP/reference | 0.97227 | 0.624 |
27DAP/reference | 1.01113 | 0.934 |
39DAP/reference | 0.96142 | 0.133 |
41DAP/reference | 1.01071 | 1 |
42DAP/reference | 0.88865 | 0.22 |
43DAP/reference | 0.92319 | 0.267 |
47DAP/reference | 0.9524 | 0.396 |
52DAP/reference | 0.9959 | 0.888 |
57DAP/reference | 0.61345 | 0.045 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.11444 | 0.85 |
26DAP/20DAP | 0.93651 | 0.512 |
34DAP/26DAP | 0.98079 | 0.98 |
51DAP/34DAP | 0.96139 | 0.66 |
52DAP/51DAP | 1.02061 | 0.842 |
53DAP/52DAP | 0.90628 | 0.371 |
55DAP/53DAP | 1.18199 | 0.275 |
57DAP/55DAP | 0.98423 | 0.88 |
62DAP/57DAP | 1.15595 | 0.133 |
68DAP/62DAP | 1.04306 | 0.971 |
68DAP/14DAP | 0.99256 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.94788 | 0.322 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.67202 | |
Mature Green Tomato/Ripe Tomato | 1.18863 | 0.523 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.05921 | |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.03703 | 0.742 |
1-1-2/M82 | 0.98818 | 1 |
12-2/M82 | 1.12133 | 1 |
12-4/M82 | 0.96361 | 1 |
1-3/M82 | 0.92001 | 0.501 |
2-1-1/M82 | 0.91213 | 0.92 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.01159 | 0.695 |
3-2/M82 | 0.96214 | 1 |
4-1-1/M82 | 0.84273 | 0.926 |
4-1/M82 | 0.95936 | 1 |
4-3-2/M82 | 0.90687 | 1 |
4-3/M82 | 0.93225 | 1 |
5-3/M82 | 0.92095 | 0.447 |
6-2/M82 | 0.96741 | 1 |
6-3/M82 | 1.11717 | 1 |
7-1/M82 | 0.98909 | |
7-2/M82 | 1.00842 | 1 |
9-3-2/M82 | 0.94447 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.64542 | 0.365 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.76557 | |
IL12-4/WTpooled | 0.94296 | |
IL1-4/WTpooled | 1.00316 | 1 |
WT/WTpooled | 1.10587 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.16977 | 0.309 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00265 | 1 |
DC3000/delta hrp 6h | 1.0004 | 0.95 |
DC3000/delta hrp 12h | 0.68663 | |
DC3000/delta hrp 24h | 1.05536 | 0.383 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.12547 | 0.229 |
DC3000 delta B/DC3000 delta AB | 1.20739 | 0.177 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.05923 | 0.254 |
Exp 36h | 0.95299 | 0.406 |
Exp 60h | 0.96508 | 0.994 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.87799 | 1 |
Var 0h | 0.8882 | 0.933 |
Var 12h I row2-row1 | 1.06608 | 0.189 |
Var 12h NI row2-row1 | 1.05024 | 1 |
Var 36h I row2-row1 | 0.81397 | 1 |
Var 36h NI row2-row1 | 1.41452 | 1 |
Var 60h I row2-row1 | 1.30312 | 0.562 |
Var 60h NI row2-row1 | 1.09651 | 0.904 |
Time course 0hI-0hNI | 1.04076 | 0.852 |
Time course 12hI-12hNI | 0.99387 | 1 |
Time course 36hI-36hNI | 0.98242 | 0.601 |
Time course 60hI-60hNI | 1.04351 | 0.426 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.40306 | 0.408 |
transgenic ySAMdc/azygous control (breaker) | 2.87069 | 0.248 |
transgenic ySAMdc/azygous control (red) | 2.0763 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01003 | 0.395 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.95017 | 0.431 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | 0.75908 | 1 |
Manapal/WT (red) | 0.89863 | 0.229 |
|
|