Tomato Functional Genomics Database (TFGD)

Expression of 1-1-1.2.10.3

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.02016	0.947
27DAP/17DAP	1.04367	0.895
39DAP/27DAP	0.78167	0.495
41DAP/39DAP	1.07732	0.638
42DAP/41DAP	0.93129	1
43DAP/42DAP	1.16016	0.885
47DAP/43DAP	0.94549	0.768
52DAP/47DAP	0.90983	0.702
57DAP/52DAP	1.00934	0.988

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.04734	0.544
17DAP/reference	1.11796	0.014
27DAP/reference	1.02555	0.612
39DAP/reference	1.02717	0.734
41DAP/reference	1.10167	0.085
42DAP/reference	0.96882	0.259
43DAP/reference	1.06125	0.126
47DAP/reference	0.98181	0.445
52DAP/reference	0.96608	0.449
57DAP/reference	0.89627	0.131

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.03807	0.797
27DAP/17DAP	1.00247	1
39DAP/27DAP	1.00821	0.832
41DAP/39DAP	1.01838	0.849
42DAP/41DAP	1.04259	0.81
43DAP/42DAP	1.01993	0.413
47DAP/43DAP	1.0309	0.833
52DAP/47DAP	0.9219	0.634
57DAP/52DAP	0.96898	0.768
57DAP/7DAP	1.03879

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.96019	0.129
17DAP/reference	0.98373	0.295
27DAP/reference	1.00138	1
39DAP/reference	1.08357	0.05
41DAP/reference	1.01697	0.918
42DAP/reference	1.00987	0.889
43DAP/reference	0.98968	0.266
47DAP/reference	0.91652	0.128
52DAP/reference	0.96229	0.398
57DAP/reference	0.99891	0.748

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.02007	0.812
17DAP/reference	1.05318	0.385
27DAP/reference	0.88697	0.129
39DAP/reference	0.98242	0.539
41DAP/reference	0.9036	0.177
42DAP/reference	0.94076	0.392
43DAP/reference	1.03931	0.633
47DAP/reference	1.01884	0.943
52DAP/reference	0.99184	0.619
57DAP/reference	1.04222	0.654

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.95953	0.082
17DAP/reference	0.97227	0.624
27DAP/reference	1.01113	0.934
39DAP/reference	0.96142	0.133
41DAP/reference	1.01071	1
42DAP/reference	0.88865	0.22
43DAP/reference	0.92319	0.267
47DAP/reference	0.9524	0.396
52DAP/reference	0.9959	0.888
57DAP/reference	0.61345	0.045

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.11444	0.85
26DAP/20DAP	0.93651	0.512
34DAP/26DAP	0.98079	0.98
51DAP/34DAP	0.96139	0.66
52DAP/51DAP	1.02061	0.842
53DAP/52DAP	0.90628	0.371
55DAP/53DAP	1.18199	0.275
57DAP/55DAP	0.98423	0.88
62DAP/57DAP	1.15595	0.133
68DAP/62DAP	1.04306	0.971
68DAP/14DAP	0.99256	1

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.94788	0.322

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	0.67202
Mature Green Tomato/Ripe Tomato	1.18863	0.523
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	1.05921
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	1.03703	0.742
1-1-2/M82	0.98818	1
12-2/M82	1.12133	1
12-4/M82	0.96361	1
1-3/M82	0.92001	0.501
2-1-1/M82	0.91213	0.92
2-1/M82	N/A	N/A
2-6/M82	1.01159	0.695
3-2/M82	0.96214	1
4-1-1/M82	0.84273	0.926
4-1/M82	0.95936	1
4-3-2/M82	0.90687	1
4-3/M82	0.93225	1
5-3/M82	0.92095	0.447
6-2/M82	0.96741	1
6-3/M82	1.11717	1
7-1/M82	0.98909
7-2/M82	1.00842	1
9-3-2/M82	0.94447	1

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.64542	0.365
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	0.76557
IL12-4/WTpooled	0.94296
IL1-4/WTpooled	1.00316	1
WT/WTpooled	1.10587

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	1.16977	0.309

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	1.00265	1
DC3000/delta hrp 6h	1.0004	0.95
DC3000/delta hrp 12h	0.68663
DC3000/delta hrp 24h	1.05536	0.383

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	1.12547	0.229
DC3000 delta B/DC3000 delta AB	1.20739	0.177

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	1.05923	0.254
Exp 36h	0.95299	0.406
Exp 60h	0.96508	0.994

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	0.87799	1
Var 0h	0.8882	0.933
Var 12h I row2-row1	1.06608	0.189
Var 12h NI row2-row1	1.05024	1
Var 36h I row2-row1	0.81397	1
Var 36h NI row2-row1	1.41452	1
Var 60h I row2-row1	1.30312	0.562
Var 60h NI row2-row1	1.09651	0.904
Time course 0hI-0hNI	1.04076	0.852
Time course 12hI-12hNI	0.99387	1
Time course 36hI-36hNI	0.98242	0.601
Time course 60hI-60hNI	1.04351	0.426

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	1.40306	0.408
transgenic ySAMdc/azygous control (breaker)	2.87069	0.248
transgenic ySAMdc/azygous control (red)	2.0763	0.92

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	1.01003	0.395

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	0.95017	0.431

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	0.75908	1
Manapal/WT (red)	0.89863	0.229