Expression of 1-1-1.2.11.21
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91248 | 0.511 |
27DAP/17DAP | 1.00377 | 0.994 |
39DAP/27DAP | 1.01713 | 0.798 |
41DAP/39DAP | 1.39171 | 0.511 |
42DAP/41DAP | 1.11422 | 0.962 |
43DAP/42DAP | 0.76172 | 0.589 |
47DAP/43DAP | 0.8566 | 0.496 |
52DAP/47DAP | 2.63686 | 0.307 |
57DAP/52DAP | 0.69794 | 0.462 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97173 | 0.526 |
17DAP/reference | 0.9698 | 0.567 |
27DAP/reference | 1.0576 | 0.623 |
39DAP/reference | 1.26242 | 0.077 |
41DAP/reference | 1.06104 | 0.587 |
42DAP/reference | 1.03329 | 1 |
43DAP/reference | 1.016 | 0.812 |
47DAP/reference | 0.96027 | 0.322 |
52DAP/reference | 0.9697 | 0.449 |
57DAP/reference | 1.13067 | 0.31 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10423 | 0.284 |
27DAP/17DAP | 0.98268 | 0.919 |
39DAP/27DAP | 1.08495 | 0.677 |
41DAP/39DAP | 1.13547 | 0.807 |
42DAP/41DAP | 0.97859 | 0.726 |
43DAP/42DAP | 1.05052 | 0.664 |
47DAP/43DAP | 1.12652 | 0.276 |
52DAP/47DAP | 0.8967 | 0.666 |
57DAP/52DAP | 0.96043 | 0.695 |
57DAP/7DAP | 1.00427 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90363 | 0.326 |
17DAP/reference | 1.00884 | 0.896 |
27DAP/reference | 1.38202 | 0.008 |
39DAP/reference | 0.84536 | 0.013 |
41DAP/reference | 0.95664 | 0.174 |
42DAP/reference | 1.09993 | 0.059 |
43DAP/reference | 0.87378 | 0.013 |
47DAP/reference | 0.91211 | 0.293 |
52DAP/reference | 0.90237 | 0.083 |
57DAP/reference | 0.78874 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.2394 | 0.049 |
17DAP/reference | 1.29689 | 0.013 |
27DAP/reference | 1.524 | 0.018 |
39DAP/reference | 1.21653 | 0.128 |
41DAP/reference | 1.16552 | 0.382 |
42DAP/reference | 1.29646 | 0.016 |
43DAP/reference | 2.29606 | 0.022 |
47DAP/reference | 1.32238 | 0.01 |
52DAP/reference | 1.32692 | 0.012 |
57DAP/reference | 1.43823 | 0.01 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95799 | 0.391 |
17DAP/reference | 1.037 | 0.977 |
27DAP/reference | 0.86762 | 0.081 |
39DAP/reference | 0.88364 | 0.083 |
41DAP/reference | 1.16161 | 0.383 |
42DAP/reference | 1.25776 | 0.034 |
43DAP/reference | 1.04483 | 1 |
47DAP/reference | 1.11562 | 0.115 |
52DAP/reference | 1.15584 | 0.148 |
57DAP/reference | 1.12756 | 0.511 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.09079 | 0.966 |
26DAP/20DAP | 1.03705 | 1 |
34DAP/26DAP | 1.02113 | 1 |
51DAP/34DAP | 1.07513 | 0.759 |
52DAP/51DAP | 0.94544 | 1 |
53DAP/52DAP | 0.43942 | |
55DAP/53DAP | 1.2815 | 0.319 |
57DAP/55DAP | 1.28475 | 0.865 |
62DAP/57DAP | 1.24546 | 0.115 |
68DAP/62DAP | 0.94134 | 0.769 |
68DAP/14DAP | 1.03309 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.51987 | 0.347 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.79297 | |
Mature Green Tomato/Ripe Tomato | 0.9769 | 0.715 |
Immature Eggplant/Mature Eggplant | 1.21847 | |
Ripe Pepper/Ripe Tomato | 3.34611 | 1 |
Mature Eggplant/Ripe Tomato | 1.15321 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.11675 | 0.591 |
1-1-2/M82 | 0.85545 | 1 |
12-2/M82 | 1.40782 | |
12-4/M82 | 1.06432 | |
1-3/M82 | 0.97384 | 1 |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.04309 | 1 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 1.19673 | |
4-3-2/M82 | 0.93531 | |
4-3/M82 | 0.97215 | |
5-3/M82 | 0.96443 | 1 |
6-2/M82 | 0.86076 | 1 |
6-3/M82 | 1.01441 | |
7-1/M82 | N/A | N/A |
7-2/M82 | 0.87861 | 0.881 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.48906 | 0.473 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.06231 | 1 |
IL12-4/WTpooled | 1.08008 | 1 |
IL1-4/WTpooled | 1.11996 | 1 |
WT/WTpooled | 0.88992 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.84215 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.07963 | 0.921 |
DC3000/delta hrp 6h | 0.93158 | 0.95 |
DC3000/delta hrp 12h | 1.58835 | 1 |
DC3000/delta hrp 24h | 1.09435 | 0.296 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.89001 | 0.288 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.01944 | 1 |
Exp 60h | 1.28638 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01823 | 1 |
Var 0h | 0.93495 | 1 |
Var 12h I row2-row1 | 1.10967 | 0.473 |
Var 12h NI row2-row1 | 0.86752 | 0.627 |
Var 36h I row2-row1 | 0.99579 | 1 |
Var 36h NI row2-row1 | 1.01295 | 1 |
Var 60h I row2-row1 | 1.2876 | 0.562 |
Var 60h NI row2-row1 | 1.14525 | 0.904 |
Time course 0hI-0hNI | 1.00584 | 1 |
Time course 12hI-12hNI | 1.00628 | 0.868 |
Time course 36hI-36hNI | 0.9851 | 0.54 |
Time course 60hI-60hNI | 1.12762 | 0.06 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.96761 | 0.362 |
transgenic ySAMdc/azygous control (breaker) | 1.17571 | 0.248 |
transgenic ySAMdc/azygous control (red) | 0.97553 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02232 | 0.234 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.79998 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.02937 | 1 |
Manapal/WT (break) | 0.85701 | 0.333 |
Manapal/WT (red) | 0.82278 | 0.181 |
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