Expression of 1-1-1.2.11.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.912480.511
27DAP/17DAP1.003770.994
39DAP/27DAP1.017130.798
41DAP/39DAP1.391710.511
42DAP/41DAP1.114220.962
43DAP/42DAP0.761720.589
47DAP/43DAP0.85660.496
52DAP/47DAP2.636860.307
57DAP/52DAP0.697940.462

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.971730.526
17DAP/reference0.96980.567
27DAP/reference1.05760.623
39DAP/reference1.262420.077
41DAP/reference1.061040.587
42DAP/reference1.033291
43DAP/reference1.0160.812
47DAP/reference0.960270.322
52DAP/reference0.96970.449
57DAP/reference1.130670.31

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.104230.284
27DAP/17DAP0.982680.919
39DAP/27DAP1.084950.677
41DAP/39DAP1.135470.807
42DAP/41DAP0.978590.726
43DAP/42DAP1.050520.664
47DAP/43DAP1.126520.276
52DAP/47DAP0.89670.666
57DAP/52DAP0.960430.695
57DAP/7DAP1.00427

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.903630.326
17DAP/reference1.008840.896
27DAP/reference1.382020.008
39DAP/reference0.845360.013
41DAP/reference0.956640.174
42DAP/reference1.099930.059
43DAP/reference0.873780.013
47DAP/reference0.912110.293
52DAP/reference0.902370.083
57DAP/reference0.788740.007

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.23940.049
17DAP/reference1.296890.013
27DAP/reference1.5240.018
39DAP/reference1.216530.128
41DAP/reference1.165520.382
42DAP/reference1.296460.016
43DAP/reference2.296060.022
47DAP/reference1.322380.01
52DAP/reference1.326920.012
57DAP/reference1.438230.01

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.957990.391
17DAP/reference1.0370.977
27DAP/reference0.867620.081
39DAP/reference0.883640.083
41DAP/reference1.161610.383
42DAP/reference1.257760.034
43DAP/reference1.044831
47DAP/reference1.115620.115
52DAP/reference1.155840.148
57DAP/reference1.127560.511

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.090790.966
26DAP/20DAP1.037051
34DAP/26DAP1.021131
51DAP/34DAP1.075130.759
52DAP/51DAP0.945441
53DAP/52DAP0.43942
55DAP/53DAP1.28150.319
57DAP/55DAP1.284750.865
62DAP/57DAP1.245460.115
68DAP/62DAP0.941340.769
68DAP/14DAP1.033091

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.519870.347

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.79297
Mature Green Tomato/Ripe Tomato0.97690.715
Immature Eggplant/Mature Eggplant1.21847
Ripe Pepper/Ripe Tomato3.346111
Mature Eggplant/Ripe Tomato1.153211

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.116750.591
1-1-2/M820.855451
12-2/M821.40782
12-4/M821.06432
1-3/M820.973841
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.043091
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M821.19673
4-3-2/M820.93531
4-3/M820.97215
5-3/M820.964431
6-2/M820.860761
6-3/M821.01441
7-1/M82N/AN/A
7-2/M820.878610.881
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.489060.473
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.062311
IL12-4/WTpooled1.080081
IL1-4/WTpooled1.119961
WT/WTpooled0.889921

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.842150.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.079630.921
DC3000/delta hrp 6h0.931580.95
DC3000/delta hrp 12h1.588351
DC3000/delta hrp 24h1.094350.296

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.890010.288

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.019441
Exp 60h1.286380.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.018231
Var 0h0.934951
Var 12h I row2-row11.109670.473
Var 12h NI row2-row10.867520.627
Var 36h I row2-row10.995791
Var 36h NI row2-row11.012951
Var 60h I row2-row11.28760.562
Var 60h NI row2-row11.145250.904
Time course 0hI-0hNI1.005841
Time course 12hI-12hNI1.006280.868
Time course 36hI-36hNI0.98510.54
Time course 60hI-60hNI1.127620.06

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.967610.362
transgenic ySAMdc/azygous control (breaker)1.175710.248
transgenic ySAMdc/azygous control (red)0.975531

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.022320.234

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.799980.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.029371
Manapal/WT (break)0.857010.333
Manapal/WT (red)0.822780.181